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The map label for this gene is ygcF [H]

Identifier: 157962169

GI number: 157962169

Start: 2861089

End: 2861757

Strand: Reverse

Name: ygcF [H]

Synonym: Spea_2348

Alternate gene names: 157962169

Gene position: 2861757-2861089 (Counterclockwise)

Preceding gene: 157962172

Following gene: 157962167

Centisome position: 55.3

GC content: 44.39

Gene sequence:

>669_bases
ATGAAATATCCAGTTAATGAAGTGTTTGAAACAATACAAGGCGAGGGGACTCATACTGGAGTGCCAGCCATTTTTGTTAG
ACTTCAAGGCTGTCCTGTTGGTTGCTCTTGGTGCGACACTAAGCAGACTTGGGAATTGCTCGAGGATAATCGAGTTGCAC
CGGACTTAGTTATTCAAGTCGATGGAACTGTGGGTCGTTGGTCGGAGTTAACTGTAGAGCAGTTAGTCAGTGCGTTTGAA
GACAAGGGCTTTACCGCCAAGCTTGTTGTGATCACAGGCGGTGAACCTTGCTTATATGACTTGAGCGAATTAACTCAATA
TCTCCATGCCCAAGGTTATCAAACGCAGATTGAGACCAGTGGAACCTTCGATGTGCTTTGTCATCCAGATACTTGGGTAA
CGGTATCACCAAAAGTGAACATGAAAGGCGGATATGCTGTATTAGCTCAGGCACTTAATCGTGCTAATGAGATTAAGCAT
CCAGTAGCGACGCAAAAGCACATCGATGAGTTAGATCTCCTGCTTGAAGACATTAACTTAACCGGTAAAACCGTCTGTTT
ACAACCCATTAGCCAGATACCTCGTGCGACAGAGTTGGCGATGAAGACCTGTATTGAGCGTAACTGGCGTTTATCGGTTC
AAACTCATAAGTACTTAAATATTGACTAG

Upstream 100 bases:

>100_bases
AGACTGAGTAGTTTAGCTCAGCTGTGAATGCTTTTAAACTACTTGCGACTCTGAGTAAAATCTACTATAAATGCCGCCCA
GCTAATCAAGAGGTCAGATA

Downstream 100 bases:

>100_bases
AGTACGCTCAACACATGCTATATGACTTAGACAGCAATTAATTCGCCCGAATTGGCTGCAATAGTTTAAATAACAAGCCC
TTGATTCTTACGAACTCAAG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQVDGTVGRWSELTVEQLVSAFE
DKGFTAKLVVITGGEPCLYDLSELTQYLHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKH
PVATQKHIDELDLLLEDINLTGKTVCLQPISQIPRATELAMKTCIERNWRLSVQTHKYLNID

Sequences:

>Translated_222_residues
MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQVDGTVGRWSELTVEQLVSAFE
DKGFTAKLVVITGGEPCLYDLSELTQYLHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKH
PVATQKHIDELDLLLEDINLTGKTVCLQPISQIPRATELAMKTCIERNWRLSVQTHKYLNID
>Mature_222_residues
MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQVDGTVGRWSELTVEQLVSAFE
DKGFTAKLVVITGGEPCLYDLSELTQYLHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKH
PVATQKHIDELDLLLEDINLTGKTVCLQPISQIPRATELAMKTCIERNWRLSVQTHKYLNID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=57.6576576576577, Blast_Score=268, Evalue=3e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24802; Mature: 24802

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQV
CCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEE
DGTVGRWSELTVEQLVSAFEDKGFTAKLVVITGGEPCLYDLSELTQYLHAQGYQTQIETS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
GTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKHPVATQKHIDELDLLLEDINL
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TGKTVCLQPISQIPRATELAMKTCIERNWRLSVQTHKYLNID
CCCEEEECHHHHCCCHHHHHHHHHHCCCCEEEEEECEEEECC
>Mature Secondary Structure
MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQV
CCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEE
DGTVGRWSELTVEQLVSAFEDKGFTAKLVVITGGEPCLYDLSELTQYLHAQGYQTQIETS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
GTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKHPVATQKHIDELDLLLEDINL
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TGKTVCLQPISQIPRATELAMKTCIERNWRLSVQTHKYLNID
CCCEEEECHHHHCCCHHHHHHHHHHCCCCEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]