| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is hypF [H]
Identifier: 157961849
GI number: 157961849
Start: 2452552
End: 2454954
Strand: Reverse
Name: hypF [H]
Synonym: Spea_2028
Alternate gene names: 157961849
Gene position: 2454954-2452552 (Counterclockwise)
Preceding gene: 157961850
Following gene: 157961848
Centisome position: 47.44
GC content: 44.53
Gene sequence:
>2403_bases ATGACTAAGAATCTGACTAAAAGTCGTTTATGTGTAAAGATCACCGGCATCGTTCAAGGTGTCGGTTTTCGTCCCTATGT TTACCGTTTAGCTCAGGAGTTAAATCTTACTGGTAGCGTACTTAATAACAGTAAAGGAGTCACCATTGAGGTTCAGGGGC ACGCTGTTGCCCTCGCCAAGTTTGAAAGCGCCCTTAGAGATCAACCGCCTCCCCTCGCTCGTATTGATAGTGTTAGTGCC ACTAGTGTGCCAATTATTGACGGCTGTAATGTCTTTGAGATCATACATAGTAAAAAAGATTGCCAAGCCGTAGTCGCAGT ATCATCCGATAAATGCACCTGTAGCGATTGCTTTGATGACATAAGAGACCCAAATAACCGCCATTTCAGATACCCGTTCA CCAATTGTACAAATTGTGGCCCAAGGTATTCGCTGATCAATGCGCTGCCCTACGATAGACCCAACACAGCTATGGCTAGT TTTTCCATGTGCCCTGATTGTGAACGGGCGTATTTAGACCCAATGGACAGACGATACCACGCCCAACCAGTGAGTTGTCC TAGGTGTGGTCCTCAGTTAAGTTTCAAACAAGCCGACCTTAGTGAGTTAAGCGTTAAAGCTGATGCACTAGAGAGTGCGA TCAACGCATTAATTGAGGGGAAAATATTAGCTATTAAGGGCATTGGAGGCTTTCATTTAGTCTGTGATGCCACTAACGAT CAAAGCGTTGAGCGCTTAAGACAGCGAAAATGTCGCCCAGCAAAACCTTTTGCCGTCATGGTTGAAAATATCGAAGCCGC TGCGAAATTAGTGAGTGGCAGCCAAGCAGAGTGGTCAACTTTAAGCAGTGCCGAGCGCCCTATTACACTGATGCGTAAAG TGACGGCACTCGATGCTCATACAAAATTCGCCTCTGATTCTGATTTCAATACTAATGCTCAACCTAATGCCCAAAAAGGC TCAACATTAGAGCTGAGTGACTTAGTTGCCCCAGAGATAGACAGACTCGGTATATTTCTGCCATATACGCCTTTACATCA ACTGTTACTCAGCGGCGTTAAGCGACCTTTAGTCATGACCAGTGCTAACTTAGCGGGTGAGCCTATCATCACTGATAGCC AAACCATCAAGACTAAACTGGCCCATGTGATCGACAATATTCTCGATCACGATCGGCCTATTTTGAATGGTTGCGATGAC AGTGTTGTTCAGCTGATCAACGATAAATTGCAGGTTCTACGCTTAGCCAGAGGCTATGCACCACTTTCTGTATATAGCGA AGCCCCCCTCTCAGAGAGCATTCTTGCTCTCGGTGCCCAGCAAAAAAACAGCATCTGTTTTGGATTTGATCATAACCTAT TTGTCAGTCCTCATATTGGTGATCTGCTATCTATCGAAGCCGAGGAATATTTTCACCATACACTGAATACATTCTCAAGA TTATATGGATTTAGTGCCGACCGACTGGTTCATGACAGTCATCCAGATTACACCACCAGTCGGTGGGCTTTAGCCCAAAA TGTGGCTAACACAAGCTCGGTTCAACATCACTTCGCCCATGTACTGAGTGTCATGGCCGTAAATAAGGTGACCACTCCAG TCCTTGGCTTTAGCTTCGATGGCACAGGTTTAGGTGATGACACAACATTATGGGGGGGAGAAGCGCTTTACTGTGACGTA AACCAATATCGGCGTATCGCTCATCTTAAAAACTTTGCACTTATTGGCGGCGAGCAAGCAATCAAGCAGCCTACTAGGCT CTTGCTCGCTATCTTGCTTGAAAAGTATTCACCACAAGAAATTAAAGATCTTAACCTTGCAGCGTTTAACAGGCTTTCAC CGATGATGTTTAACAACCTTGTTAAACTTTGGCAGTCTGACAACTGCATCAAGACCTCATCAATTGGTAGATTGTTTGAT GCTGTCGCGGTTGTTCTTGGACTAATCAATGAAACTGTCTATGAAGGACAAGCTGGGATCTTGATTGAAACAGCAGCCAA TAGCCTAGAGAACCAAGTTAAGCTGAAAAATATTGATAGCAAACAAACCATTCAATTTAATATAGAACGGGTTAATTCCC AGTGGGATAGCTCAGAGCTGTTACACCAGATTATAGAGCGAGTAACTGAAGCCCCACTAAGCCAATATCGCATTGCGCAA ATCGCTAAAGCGTTTATGGACGCTTTGAGCAATATGTTATGTGAGTGTGCTAAAGACTACCTCGATACCCCAATCGTACT TTGCGGCGGCGTATTTCAAAATCGTTATCTACTCGAGCGGTGTGAAAAACAATTGAGTGCCCAAGGGAATCGCCTGCTTT CAAGTGAAAAAGTACCAATAAATGATGCAGGTATTGCCCTAGGTCAGCTTTGGTACGCAATGCATAACAGTACACATGTG TGA
Upstream 100 bases:
>100_bases CCTCAACACTAATCCACAGATGGATCTTGATGGGCTGAATATTGCAGTAGGTGCATTGTATCTTAAGCAGCGTAGACACT AAGTAGCAGTGACTGTATCC
Downstream 100 bases:
>100_bases TATCCATCACCACTCAATAGACATAAATCTGATTTGCATCAAAGCCGTAGTATTCGGCCTGCGTGACAATCAAGTAAAAC GAAAATAACGGAGTTACCTA
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 800; Mature: 799
Protein sequence:
>800_residues MTKNLTKSRLCVKITGIVQGVGFRPYVYRLAQELNLTGSVLNNSKGVTIEVQGHAVALAKFESALRDQPPPLARIDSVSA TSVPIIDGCNVFEIIHSKKDCQAVVAVSSDKCTCSDCFDDIRDPNNRHFRYPFTNCTNCGPRYSLINALPYDRPNTAMAS FSMCPDCERAYLDPMDRRYHAQPVSCPRCGPQLSFKQADLSELSVKADALESAINALIEGKILAIKGIGGFHLVCDATND QSVERLRQRKCRPAKPFAVMVENIEAAAKLVSGSQAEWSTLSSAERPITLMRKVTALDAHTKFASDSDFNTNAQPNAQKG STLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMTSANLAGEPIITDSQTIKTKLAHVIDNILDHDRPILNGCDD SVVQLINDKLQVLRLARGYAPLSVYSEAPLSESILALGAQQKNSICFGFDHNLFVSPHIGDLLSIEAEEYFHHTLNTFSR LYGFSADRLVHDSHPDYTTSRWALAQNVANTSSVQHHFAHVLSVMAVNKVTTPVLGFSFDGTGLGDDTTLWGGEALYCDV NQYRRIAHLKNFALIGGEQAIKQPTRLLLAILLEKYSPQEIKDLNLAAFNRLSPMMFNNLVKLWQSDNCIKTSSIGRLFD AVAVVLGLINETVYEGQAGILIETAANSLENQVKLKNIDSKQTIQFNIERVNSQWDSSELLHQIIERVTEAPLSQYRIAQ IAKAFMDALSNMLCECAKDYLDTPIVLCGGVFQNRYLLERCEKQLSAQGNRLLSSEKVPINDAGIALGQLWYAMHNSTHV
Sequences:
>Translated_800_residues MTKNLTKSRLCVKITGIVQGVGFRPYVYRLAQELNLTGSVLNNSKGVTIEVQGHAVALAKFESALRDQPPPLARIDSVSA TSVPIIDGCNVFEIIHSKKDCQAVVAVSSDKCTCSDCFDDIRDPNNRHFRYPFTNCTNCGPRYSLINALPYDRPNTAMAS FSMCPDCERAYLDPMDRRYHAQPVSCPRCGPQLSFKQADLSELSVKADALESAINALIEGKILAIKGIGGFHLVCDATND QSVERLRQRKCRPAKPFAVMVENIEAAAKLVSGSQAEWSTLSSAERPITLMRKVTALDAHTKFASDSDFNTNAQPNAQKG STLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMTSANLAGEPIITDSQTIKTKLAHVIDNILDHDRPILNGCDD SVVQLINDKLQVLRLARGYAPLSVYSEAPLSESILALGAQQKNSICFGFDHNLFVSPHIGDLLSIEAEEYFHHTLNTFSR LYGFSADRLVHDSHPDYTTSRWALAQNVANTSSVQHHFAHVLSVMAVNKVTTPVLGFSFDGTGLGDDTTLWGGEALYCDV NQYRRIAHLKNFALIGGEQAIKQPTRLLLAILLEKYSPQEIKDLNLAAFNRLSPMMFNNLVKLWQSDNCIKTSSIGRLFD AVAVVLGLINETVYEGQAGILIETAANSLENQVKLKNIDSKQTIQFNIERVNSQWDSSELLHQIIERVTEAPLSQYRIAQ IAKAFMDALSNMLCECAKDYLDTPIVLCGGVFQNRYLLERCEKQLSAQGNRLLSSEKVPINDAGIALGQLWYAMHNSTHV >Mature_799_residues TKNLTKSRLCVKITGIVQGVGFRPYVYRLAQELNLTGSVLNNSKGVTIEVQGHAVALAKFESALRDQPPPLARIDSVSAT SVPIIDGCNVFEIIHSKKDCQAVVAVSSDKCTCSDCFDDIRDPNNRHFRYPFTNCTNCGPRYSLINALPYDRPNTAMASF SMCPDCERAYLDPMDRRYHAQPVSCPRCGPQLSFKQADLSELSVKADALESAINALIEGKILAIKGIGGFHLVCDATNDQ SVERLRQRKCRPAKPFAVMVENIEAAAKLVSGSQAEWSTLSSAERPITLMRKVTALDAHTKFASDSDFNTNAQPNAQKGS TLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMTSANLAGEPIITDSQTIKTKLAHVIDNILDHDRPILNGCDDS VVQLINDKLQVLRLARGYAPLSVYSEAPLSESILALGAQQKNSICFGFDHNLFVSPHIGDLLSIEAEEYFHHTLNTFSRL YGFSADRLVHDSHPDYTTSRWALAQNVANTSSVQHHFAHVLSVMAVNKVTTPVLGFSFDGTGLGDDTTLWGGEALYCDVN QYRRIAHLKNFALIGGEQAIKQPTRLLLAILLEKYSPQEIKDLNLAAFNRLSPMMFNNLVKLWQSDNCIKTSSIGRLFDA VAVVLGLINETVYEGQAGILIETAANSLENQVKLKNIDSKQTIQFNIERVNSQWDSSELLHQIIERVTEAPLSQYRIAQI AKAFMDALSNMLCECAKDYLDTPIVLCGGVFQNRYLLERCEKQLSAQGNRLLSSEKVPINDAGIALGQLWYAMHNSTHV
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=802, Percent_Identity=35.9102244389027, Blast_Score=391, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 88343; Mature: 88212
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKNLTKSRLCVKITGIVQGVGFRPYVYRLAQELNLTGSVLNNSKGVTIEVQGHAVALAK CCCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEHHHH FESALRDQPPPLARIDSVSATSVPIIDGCNVFEIIHSKKDCQAVVAVSSDKCTCSDCFDD HHHHHCCCCCCCHHCCCCCCCCCCEECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHH IRDPNNRHFRYPFTNCTNCGPRYSLINALPYDRPNTAMASFSMCPDCERAYLDPMDRRYH HCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCHHHCCC AQPVSCPRCGPQLSFKQADLSELSVKADALESAINALIEGKILAIKGIGGFHLVCDATND CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCC QSVERLRQRKCRPAKPFAVMVENIEAAAKLVSGSQAEWSTLSSAERPITLMRKVTALDAH HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHH TKFASDSDFNTNAQPNAQKGSTLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMT HCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCHHHCEEECCCHHHHHHHHHHCCCCEEEE SANLAGEPIITDSQTIKTKLAHVIDNILDHDRPILNGCDDSVVQLINDKLQVLRLARGYA ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCC PLSVYSEAPLSESILALGAQQKNSICFGFDHNLFVSPHIGDLLSIEAEEYFHHTLNTFSR CHHHCCCCCCHHHHHHHCCCCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH LYGFSADRLVHDSHPDYTTSRWALAQNVANTSSVQHHFAHVLSVMAVNKVTTPVLGFSFD HHCCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC GTGLGDDTTLWGGEALYCDVNQYRRIAHLKNFALIGGEQAIKQPTRLLLAILLEKYSPQE CCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCH IKDLNLAAFNRLSPMMFNNLVKLWQSDNCIKTSSIGRLFDAVAVVLGLINETVYEGQAGI HHHCCHHHHHHCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LIETAANSLENQVKLKNIDSKQTIQFNIERVNSQWDSSELLHQIIERVTEAPLSQYRIAQ EEEHHHHHHHHCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH IAKAFMDALSNMLCECAKDYLDTPIVLCGGVFQNRYLLERCEKQLSAQGNRLLSSEKVPI HHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NDAGIALGQLWYAMHNSTHV CHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TKNLTKSRLCVKITGIVQGVGFRPYVYRLAQELNLTGSVLNNSKGVTIEVQGHAVALAK CCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEHHHH FESALRDQPPPLARIDSVSATSVPIIDGCNVFEIIHSKKDCQAVVAVSSDKCTCSDCFDD HHHHHCCCCCCCHHCCCCCCCCCCEECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHH IRDPNNRHFRYPFTNCTNCGPRYSLINALPYDRPNTAMASFSMCPDCERAYLDPMDRRYH HCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCHHHCCC AQPVSCPRCGPQLSFKQADLSELSVKADALESAINALIEGKILAIKGIGGFHLVCDATND CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCC QSVERLRQRKCRPAKPFAVMVENIEAAAKLVSGSQAEWSTLSSAERPITLMRKVTALDAH HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHH TKFASDSDFNTNAQPNAQKGSTLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMT HCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCHHHCEEECCCHHHHHHHHHHCCCCEEEE SANLAGEPIITDSQTIKTKLAHVIDNILDHDRPILNGCDDSVVQLINDKLQVLRLARGYA ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCC PLSVYSEAPLSESILALGAQQKNSICFGFDHNLFVSPHIGDLLSIEAEEYFHHTLNTFSR CHHHCCCCCCHHHHHHHCCCCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH LYGFSADRLVHDSHPDYTTSRWALAQNVANTSSVQHHFAHVLSVMAVNKVTTPVLGFSFD HHCCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC GTGLGDDTTLWGGEALYCDVNQYRRIAHLKNFALIGGEQAIKQPTRLLLAILLEKYSPQE CCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCH IKDLNLAAFNRLSPMMFNNLVKLWQSDNCIKTSSIGRLFDAVAVVLGLINETVYEGQAGI HHHCCHHHHHHCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LIETAANSLENQVKLKNIDSKQTIQFNIERVNSQWDSSELLHQIIERVTEAPLSQYRIAQ EEEHHHHHHHHCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH IAKAFMDALSNMLCECAKDYLDTPIVLCGGVFQNRYLLERCEKQLSAQGNRLLSSEKVPI HHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NDAGIALGQLWYAMHNSTHV CHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]