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The map label for this gene is sodB [H]

Identifier: 157961786

GI number: 157961786

Start: 2388916

End: 2389500

Strand: Reverse

Name: sodB [H]

Synonym: Spea_1963

Alternate gene names: 157961786

Gene position: 2389500-2388916 (Counterclockwise)

Preceding gene: 157961788

Following gene: 157961785

Centisome position: 46.18

GC content: 42.91

Gene sequence:

>585_bases
ATGGCTTTTGAATTACCAGCATTACCTTACGCAAAGAACGCACTTGAGCCACACATCTCGGAAGAAACAATTAACTTTCA
TTACGGTAAGCACCACAACACTTACGTTGTTAAGCTTAACGGTTTAGTTGAAGGTACTGAACTTGAGCAAAAGAGCCTAG
AAGAGATTATTAAAACCTCTACTGGTGGTATCTTTAACAACGCAGCTCAAATCTGGAATCACACTTTCTACTGGAACTGT
CTATCACCAAATGGTGGAGGTGAAGCAACTGGTCCTGTAGCAGAAGCTATCATTGCTGCATTTGGCTCATTTGAAGCATT
TAAGGCACAGTTCACTGATTCTGCAGTAAACAACTTCGGTAGCGCTTGGACATGGCTTGTCAAAAATGCAGACGGCACTG
TCGCTATTGTTAATACTAGCAACGCTGCAACACCTCTTACAGATGAAGGCGTGACGCCAATCATGACTGTTGACGTGTGG
GAACACGCTTACTACATCGATTACCGTAACGTACGCCCAGACTATCTAGCTCACTTTTGGCAATTAGTTAACTGGGATTT
TGTGAATGCAAACTTCGCAGCTTAA

Upstream 100 bases:

>100_bases
TTGAATAAACAATGATACACTTCACAAGTTTATTAGGTAAAATGTTTCGCAGTGAGCAAGAACGCACAAAATAACAAACT
AGAGTTAACGGAGAAAACTA

Downstream 100 bases:

>100_bases
TCAATAAATACCGCAAAAATTAACAAGGAGCCTTATGGCTCCTTTTTTATTATATTTTTCTAATCCAAACTTTTATATCA
AGTGCAACTATTGCAAATGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAFELPALPYAKNALEPHISEETINFHYGKHHNTYVVKLNGLVEGTELEQKSLEEIIKTSTGGIFNNAAQIWNHTFYWNC
LSPNGGGEATGPVAEAIIAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKNADGTVAIVNTSNAATPLTDEGVTPIMTVDVW
EHAYYIDYRNVRPDYLAHFWQLVNWDFVNANFAA

Sequences:

>Translated_194_residues
MAFELPALPYAKNALEPHISEETINFHYGKHHNTYVVKLNGLVEGTELEQKSLEEIIKTSTGGIFNNAAQIWNHTFYWNC
LSPNGGGEATGPVAEAIIAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKNADGTVAIVNTSNAATPLTDEGVTPIMTVDVW
EHAYYIDYRNVRPDYLAHFWQLVNWDFVNANFAA
>Mature_193_residues
AFELPALPYAKNALEPHISEETINFHYGKHHNTYVVKLNGLVEGTELEQKSLEEIIKTSTGGIFNNAAQIWNHTFYWNCL
SPNGGGEATGPVAEAIIAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKNADGTVAIVNTSNAATPLTDEGVTPIMTVDVWE
HAYYIDYRNVRPDYLAHFWQLVNWDFVNANFAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=41.2060301507538, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=41.2060301507538, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=191, Percent_Identity=35.0785340314136, Blast_Score=114, Evalue=4e-26,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=73.7113402061856, Blast_Score=307, Evalue=3e-85,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=41.5458937198068, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=38.5416666666667, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=191, Percent_Identity=36.1256544502618, Blast_Score=129, Evalue=9e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=34.2857142857143, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17136812, Length=192, Percent_Identity=38.5416666666667, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21536; Mature: 21405

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYAKNALEPHISEETINFHYGKHHNTYVVKLNGLVEGTELEQKSLEEIIKTS
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCEECCCHHHHHHHHHHHHHC
TGGIFNNAAQIWNHTFYWNCLSPNGGGEATGPVAEAIIAAFGSFEAFKAQFTDSAVNNFG
CCCCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
SAWTWLVKNADGTVAIVNTSNAATPLTDEGVTPIMTVDVWEHAYYIDYRNVRPDYLAHFW
CEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECEEEEEEECCCCHHHHHHHH
QLVNWDFVNANFAA
HHHCCEEECCCCCC
>Mature Secondary Structure 
AFELPALPYAKNALEPHISEETINFHYGKHHNTYVVKLNGLVEGTELEQKSLEEIIKTS
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCEECCCHHHHHHHHHHHHHC
TGGIFNNAAQIWNHTFYWNCLSPNGGGEATGPVAEAIIAAFGSFEAFKAQFTDSAVNNFG
CCCCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
SAWTWLVKNADGTVAIVNTSNAATPLTDEGVTPIMTVDVWEHAYYIDYRNVRPDYLAHFW
CEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECEEEEEEECCCCHHHHHHHH
QLVNWDFVNANFAA
HHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]