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The map label for this gene is rarD [C]

Identifier: 157961685

GI number: 157961685

Start: 2266076

End: 2267017

Strand: Reverse

Name: rarD [C]

Synonym: Spea_1861

Alternate gene names: 157961685

Gene position: 2267017-2266076 (Counterclockwise)

Preceding gene: 157961687

Following gene: 157961682

Centisome position: 43.81

GC content: 46.71

Gene sequence:

>942_bases
ATGCAATCCACAACATCCCAAAACGCTGCCTCTTCATTTAAGGGCAACGCACTTGCTGCTTTCTCGTTTCTATTATGGGG
CTTGATGCCGCTCTACTATCATTTTTTGCCGAATGCCAATATCAATGAGTTACTAGCATTTAGGATCCTGTTCTCTGTGC
CTTTTATGGCACTGGTGTTTGTGCTGATGGGACGCCGTTTTCCCTCAATTGCGACTCTTAAAGCCGACAAGAGATCTGTG
CTGCTATGCGGGCTAGCCTCGCTTATCATGTGCGTGTCTTGGTACAGCTTTACCTGGGCTATCACTCATGGACAAGTGCT
TGCGGCTAGCTTAGGCTTTTTCATTAACCCACTGTTTGCTATTGGTTTAGGCGTGTTATTTCTTGGTGATAAGCTCAGTG
CAGCACAAAAAATGGCAGTGGTATTGGGCACCTGTGGCATAAGTTACATGGTTTATAGCTATGGTGAACTGCCTTGGCTT
GCACTCAGCATGGGCAGCTTTTTTGCACTCTACGGCCTTTGTAAAAAGTTTATCCGCTTCGACTCGCTCACCTCAGTAAC
AGTAGAGGCGCTTTTATTGATGCCTGTTGCTGCAGTCTATTTACTGTGGCTGTGGAGCTCAGATCAAAGCGTGGCGATAT
CGGCTGCACTATCAGGGCAGACATCGGTATTGCTGCTCTATATTGGCTCAGCGCCTGTGACCTTAATGCCTTTGGTCTTC
TTTGCGCTGGCCATCAGGGCGACAAGCTTATCTATGATAGGGCTAATGCAATATATCGAGCCTAGTTTGCAATTCTTGCT
GGCTGTGATTGTATTTAATGAAGTGTTTGATCAAGTAAAAGCGGTAAGCTTCGCCTTGATCTGGACCGGACTACTGTTAT
GTTCATTAGAAGCGCTGCCCGCACTAAGACACAAGTATCGAGCAAGCCGACATCCTAGTTAG

Upstream 100 bases:

>100_bases
TTAAAATCACTAGCACAAGGTGATTCAAGTCACACTCTTTATGCCCAGCTAATGAGAAAATACCGCCTTTAATAGCCTAA
CCTGTTCCAGCTAAACTCAT

Downstream 100 bases:

>100_bases
TAATCCATACCCAGAGAACCGTAGCCATTAGTGCTACGGTTCACCTCAGCTTCCGGTCTAAGAAGGGGCTAGATCCTAGG
GCGCTTCGCTGCGAGGACGG

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQSTTSQNAASSFKGNALAAFSFLLWGLMPLYYHFLPNANINELLAFRILFSVPFMALVFVLMGRRFPSIATLKADKRSV
LLCGLASLIMCVSWYSFTWAITHGQVLAASLGFFINPLFAIGLGVLFLGDKLSAAQKMAVVLGTCGISYMVYSYGELPWL
ALSMGSFFALYGLCKKFIRFDSLTSVTVEALLLMPVAAVYLLWLWSSDQSVAISAALSGQTSVLLLYIGSAPVTLMPLVF
FALAIRATSLSMIGLMQYIEPSLQFLLAVIVFNEVFDQVKAVSFALIWTGLLLCSLEALPALRHKYRASRHPS

Sequences:

>Translated_313_residues
MQSTTSQNAASSFKGNALAAFSFLLWGLMPLYYHFLPNANINELLAFRILFSVPFMALVFVLMGRRFPSIATLKADKRSV
LLCGLASLIMCVSWYSFTWAITHGQVLAASLGFFINPLFAIGLGVLFLGDKLSAAQKMAVVLGTCGISYMVYSYGELPWL
ALSMGSFFALYGLCKKFIRFDSLTSVTVEALLLMPVAAVYLLWLWSSDQSVAISAALSGQTSVLLLYIGSAPVTLMPLVF
FALAIRATSLSMIGLMQYIEPSLQFLLAVIVFNEVFDQVKAVSFALIWTGLLLCSLEALPALRHKYRASRHPS
>Mature_313_residues
MQSTTSQNAASSFKGNALAAFSFLLWGLMPLYYHFLPNANINELLAFRILFSVPFMALVFVLMGRRFPSIATLKADKRSV
LLCGLASLIMCVSWYSFTWAITHGQVLAASLGFFINPLFAIGLGVLFLGDKLSAAQKMAVVLGTCGISYMVYSYGELPWL
ALSMGSFFALYGLCKKFIRFDSLTSVTVEALLLMPVAAVYLLWLWSSDQSVAISAALSGQTSVLLLYIGSAPVTLMPLVF
FALAIRATSLSMIGLMQYIEPSLQFLLAVIVFNEVFDQVKAVSFALIWTGLLLCSLEALPALRHKYRASRHPS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=302, Percent_Identity=33.7748344370861, Blast_Score=167, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34301; Mature: 34301

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTTSQNAASSFKGNALAAFSFLLWGLMPLYYHFLPNANINELLAFRILFSVPFMALVF
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLMGRRFPSIATLKADKRSVLLCGLASLIMCVSWYSFTWAITHGQVLAASLGFFINPLFA
HHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHH
IGLGVLFLGDKLSAAQKMAVVLGTCGISYMVYSYGELPWLALSMGSFFALYGLCKKFIRF
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DSLTSVTVEALLLMPVAAVYLLWLWSSDQSVAISAALSGQTSVLLLYIGSAPVTLMPLVF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHH
FALAIRATSLSMIGLMQYIEPSLQFLLAVIVFNEVFDQVKAVSFALIWTGLLLCSLEALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRHKYRASRHPS
HHHHHHHHCCCCC
>Mature Secondary Structure
MQSTTSQNAASSFKGNALAAFSFLLWGLMPLYYHFLPNANINELLAFRILFSVPFMALVF
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLMGRRFPSIATLKADKRSVLLCGLASLIMCVSWYSFTWAITHGQVLAASLGFFINPLFA
HHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHH
IGLGVLFLGDKLSAAQKMAVVLGTCGISYMVYSYGELPWLALSMGSFFALYGLCKKFIRF
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DSLTSVTVEALLLMPVAAVYLLWLWSSDQSVAISAALSGQTSVLLLYIGSAPVTLMPLVF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHH
FALAIRATSLSMIGLMQYIEPSLQFLLAVIVFNEVFDQVKAVSFALIWTGLLLCSLEALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRHKYRASRHPS
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]