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The map label for this gene is 157961533

Identifier: 157961533

GI number: 157961533

Start: 2074870

End: 2076399

Strand: Reverse

Name: 157961533

Synonym: Spea_1708

Alternate gene names: NA

Gene position: 2076399-2074870 (Counterclockwise)

Preceding gene: 157961535

Following gene: 157961532

Centisome position: 40.13

GC content: 43.79

Gene sequence:

>1530_bases
ATGGATACAGACTATTTAATAGTCGGTAGTGGACTATCCGCATTAGTGTTCGCCGCGCTGAGTGCAAAGTCTGGTAAGAA
GGTCGTGATACTAGAGGCACATGAATACCCCGGCGGATTTGGCCATACTTTCCCTATCGCAAAGCATTACAAATTCAATG
CCCAGCTTCACTACGTCTGGAATTGTGGTGAAGGTGATACAGTCAACAACGTTCTTAAAAAGCTGCAATTAGAGGAACAG
GTCACTTTCGAATCATTCGATCCTCAAGGCTTCGATCATATGCGTATGCCTGAGTATCAACTCGATATTCCCTATGACTC
CGATCTACTGCTTTCAAGGCTTAAGGAGCTGTTTCCTAAACATTCTAAGCAATGCACCACCTTCATCAATGAGGTCAGGC
GAACGGCAAATGGACTCGGCGTGCTGTCCGGTGACGAGCGATTTAAAAATATCCTTAAAAATCTAGAACAAGCCGCAACC
GCATACCGGAATATCAAGTTTACTCTGCAGCAGATGTTTGACAAACATAAGCTGCCACTGGAAGCACAAACATTACTAGC
ATTGCAGTGGCCAGATTTTTTACTTCCCCCTAATCAGCTTTCATTTTGTGCCTGGGTGCTACTGTTTACCGGTTATCAGA
GGGGAGCTTATTACCCCACTCATCATTTCGAACATGTGATAACAAGCTTAGTCGACACTATTGAAGCTAACGACGGACAG
ATCATCTACCAAACTCAGGTCGACAATTTTGTTTTGGAGAATGATCGAGTAGTGGCAGTTGAAGCGACAGATCTGACAAC
CAATATCACGCTGCGCTATGACGCAAAGTGCACTATTTGTAATATGGATCCTAAAAAAGCTGCCCACCTAATCGGCATAG
AAAAGTTCTCTTTAAAACTTAGAAGACAATTGGACTATGACTATTCAGCTTCTAACTTTATGGCCTACTGCGCCGTTAAA
GATATTAATCTTGAGGACTACGGCTTTGGCAGATGGAATATTTTTCACTCTAATCATAAGGATCTCAATCTAGCCTTCGA
TGCCATGTATAACCAACATGATTACTCTGCCCCAAGTTTTGCAATGTCCACCCCCGGATTTTTAACCCAAGATTCTTCCG
ATAGACCAGAGGGTCATCAGATCATCGAGTTCGTTACTGTCGCAGATTACCAGTATTTTAAGGCGTTAAAGTCGCGGGAT
CCGAGGGCCTATAGACAGAAGAAAAGAGCAATATTAGATGCTATTGTGAATACTGTAGAGGAGCATTACGTTCCAAACTT
TCGGGAACACTTAACCTATAAGAGCACGGGTAGCCCGACGACAAATGAAGACTTCTGCTGGTGCCCAGAAGGTAACTCAT
ATGGTTCAGCGATGACTCCCAGTAATTTCAATCTATGGCGTTTAAATCATAACAGCTCGCTTAAAGGGCTCTACTTTTGT
AACGCCTCATCAGGATACGCAGGCTTTGCAGGTACATTTTGGACCGGAGCTAAGCTATACCAGCACCTGAGCGGAGAGCG
TATTCTATAA

Upstream 100 bases:

>100_bases
TTGCTGGCTATCAACTCGCAAACTACAATTAAAGGCACTGTGTTTTCTAGTCCCAAAAAGTGAAACTAACGAATCTCGCC
ACCAGCAGATGGAGTCGATA

Downstream 100 bases:

>100_bases
TTTAACGATAACCACACCGCACTTACGAATATGGGGGAAAATAATGAAGTTTGCGATTATAGGTGGCGGGGCCAGCGGTA
TGATTACCGCCTACTACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: All-Trans-Retinol; Phytoene Dehydrogenase; Phytoene Dehydrogenase-Like Protein; Carotenoid Isomerase; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase And Related Protein; Dehydrogenase-Related Protein; Amine Oxidase Flavin-Containing; Phytoene Dehydrogenase-Related Protein; Phytoene Dehydrogenase Or

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MDTDYLIVGSGLSALVFAALSAKSGKKVVILEAHEYPGGFGHTFPIAKHYKFNAQLHYVWNCGEGDTVNNVLKKLQLEEQ
VTFESFDPQGFDHMRMPEYQLDIPYDSDLLLSRLKELFPKHSKQCTTFINEVRRTANGLGVLSGDERFKNILKNLEQAAT
AYRNIKFTLQQMFDKHKLPLEAQTLLALQWPDFLLPPNQLSFCAWVLLFTGYQRGAYYPTHHFEHVITSLVDTIEANDGQ
IIYQTQVDNFVLENDRVVAVEATDLTTNITLRYDAKCTICNMDPKKAAHLIGIEKFSLKLRRQLDYDYSASNFMAYCAVK
DINLEDYGFGRWNIFHSNHKDLNLAFDAMYNQHDYSAPSFAMSTPGFLTQDSSDRPEGHQIIEFVTVADYQYFKALKSRD
PRAYRQKKRAILDAIVNTVEEHYVPNFREHLTYKSTGSPTTNEDFCWCPEGNSYGSAMTPSNFNLWRLNHNSSLKGLYFC
NASSGYAGFAGTFWTGAKLYQHLSGERIL

Sequences:

>Translated_509_residues
MDTDYLIVGSGLSALVFAALSAKSGKKVVILEAHEYPGGFGHTFPIAKHYKFNAQLHYVWNCGEGDTVNNVLKKLQLEEQ
VTFESFDPQGFDHMRMPEYQLDIPYDSDLLLSRLKELFPKHSKQCTTFINEVRRTANGLGVLSGDERFKNILKNLEQAAT
AYRNIKFTLQQMFDKHKLPLEAQTLLALQWPDFLLPPNQLSFCAWVLLFTGYQRGAYYPTHHFEHVITSLVDTIEANDGQ
IIYQTQVDNFVLENDRVVAVEATDLTTNITLRYDAKCTICNMDPKKAAHLIGIEKFSLKLRRQLDYDYSASNFMAYCAVK
DINLEDYGFGRWNIFHSNHKDLNLAFDAMYNQHDYSAPSFAMSTPGFLTQDSSDRPEGHQIIEFVTVADYQYFKALKSRD
PRAYRQKKRAILDAIVNTVEEHYVPNFREHLTYKSTGSPTTNEDFCWCPEGNSYGSAMTPSNFNLWRLNHNSSLKGLYFC
NASSGYAGFAGTFWTGAKLYQHLSGERIL
>Mature_509_residues
MDTDYLIVGSGLSALVFAALSAKSGKKVVILEAHEYPGGFGHTFPIAKHYKFNAQLHYVWNCGEGDTVNNVLKKLQLEEQ
VTFESFDPQGFDHMRMPEYQLDIPYDSDLLLSRLKELFPKHSKQCTTFINEVRRTANGLGVLSGDERFKNILKNLEQAAT
AYRNIKFTLQQMFDKHKLPLEAQTLLALQWPDFLLPPNQLSFCAWVLLFTGYQRGAYYPTHHFEHVITSLVDTIEANDGQ
IIYQTQVDNFVLENDRVVAVEATDLTTNITLRYDAKCTICNMDPKKAAHLIGIEKFSLKLRRQLDYDYSASNFMAYCAVK
DINLEDYGFGRWNIFHSNHKDLNLAFDAMYNQHDYSAPSFAMSTPGFLTQDSSDRPEGHQIIEFVTVADYQYFKALKSRD
PRAYRQKKRAILDAIVNTVEEHYVPNFREHLTYKSTGSPTTNEDFCWCPEGNSYGSAMTPSNFNLWRLNHNSSLKGLYFC
NASSGYAGFAGTFWTGAKLYQHLSGERIL

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI203098013, Length=484, Percent_Identity=22.5206611570248, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58172; Mature: 58172

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTDYLIVGSGLSALVFAALSAKSGKKVVILEAHEYPGGFGHTFPIAKHYKFNAQLHYVW
CCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEE
NCGEGDTVNNVLKKLQLEEQVTFESFDPQGFDHMRMPEYQLDIPYDSDLLLSRLKELFPK
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
HSKQCTTFINEVRRTANGLGVLSGDERFKNILKNLEQAATAYRNIKFTLQQMFDKHKLPL
CCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EAQTLLALQWPDFLLPPNQLSFCAWVLLFTGYQRGAYYPTHHFEHVITSLVDTIEANDGQ
CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IIYQTQVDNFVLENDRVVAVEATDLTTNITLRYDAKCTICNMDPKKAAHLIGIEKFSLKL
EEEEEECCCEEECCCEEEEEEECCCEEEEEEEECCEEEEECCCHHHHHHHEEHHHHHHHH
RRQLDYDYSASNFMAYCAVKDINLEDYGFGRWNIFHSNHKDLNLAFDAMYNQHDYSAPSF
HHHCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEHHCCCCCCCCCC
AMSTPGFLTQDSSDRPEGHQIIEFVTVADYQYFKALKSRDPRAYRQKKRAILDAIVNTVE
CCCCCCCEECCCCCCCCCHHEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EHYVPNFREHLTYKSTGSPTTNEDFCWCPEGNSYGSAMTPSNFNLWRLNHNSSLKGLYFC
HHCCCCHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEE
NASSGYAGFAGTFWTGAKLYQHLSGERIL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTDYLIVGSGLSALVFAALSAKSGKKVVILEAHEYPGGFGHTFPIAKHYKFNAQLHYVW
CCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEE
NCGEGDTVNNVLKKLQLEEQVTFESFDPQGFDHMRMPEYQLDIPYDSDLLLSRLKELFPK
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
HSKQCTTFINEVRRTANGLGVLSGDERFKNILKNLEQAATAYRNIKFTLQQMFDKHKLPL
CCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EAQTLLALQWPDFLLPPNQLSFCAWVLLFTGYQRGAYYPTHHFEHVITSLVDTIEANDGQ
CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IIYQTQVDNFVLENDRVVAVEATDLTTNITLRYDAKCTICNMDPKKAAHLIGIEKFSLKL
EEEEEECCCEEECCCEEEEEEECCCEEEEEEEECCEEEEECCCHHHHHHHEEHHHHHHHH
RRQLDYDYSASNFMAYCAVKDINLEDYGFGRWNIFHSNHKDLNLAFDAMYNQHDYSAPSF
HHHCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEHHCCCCCCCCCC
AMSTPGFLTQDSSDRPEGHQIIEFVTVADYQYFKALKSRDPRAYRQKKRAILDAIVNTVE
CCCCCCCEECCCCCCCCCHHEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EHYVPNFREHLTYKSTGSPTTNEDFCWCPEGNSYGSAMTPSNFNLWRLNHNSSLKGLYFC
HHCCCCHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEE
NASSGYAGFAGTFWTGAKLYQHLSGERIL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA