Definition Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession NC_009901
Length 5,174,581

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The map label for this gene is yciK [H]

Identifier: 157961475

GI number: 157961475

Start: 1992853

End: 1993590

Strand: Reverse

Name: yciK [H]

Synonym: Spea_1649

Alternate gene names: 157961475

Gene position: 1993590-1992853 (Counterclockwise)

Preceding gene: 157961478

Following gene: 157961469

Centisome position: 38.53

GC content: 46.21

Gene sequence:

>738_bases
ATGTTGGAATATCAAGCAGCAAAAGATCTATTAAAAGACAAGACCATTTTAGTCACTGGCGCAGGAGACGGCATAGGTAA
GGCCGCGGCTATCGCTTTTGCAAAACATGGTGCAACAGTTATCTTGTTAGGCAAGACAGTTAAGAAATTAGAAGCTGTGT
ATGACCAAATTGAACAAGCGGGTTACCCTACTCCTGCGATTGTTCCTCTTGATCTTAAGGGTGCGACTGAACAGAACTAT
AAAGATATGGCCGACACCATAGAAGAGCAGTTTGGTCAGCTAGACGGTCTATTACATAACGCCAGCGTATTAGGTGTATT
GGGTCCGTTTGAGCACATGACAATGAGCACGGTAAATGAAGTTATGCAGGTTAATGTCATTGCAGAGATCATGCTGACTA
AGGCTCTGCTACCTGTGATGCGTAAGTCTCCAAGTGCTTCGCTACTCTTTACCTCAAGTAGTGTGGGCCGTCAGGGACGT
GCATACTGGGGCGAGTACGCTATCTCTAAGTTCGCCACCGAAGGCATGATGCAATCTCTTGCTCACGAATATGAAGATAC
CAATGTACGCGTTAATAGCATCAACCCGGGCGCCACACGCACTGGCATGCGCGCAAATGCCTACCCGGCTGAGAATCCGC
AAACGCTAAAAGCACCAGATGAGATCATGGCAACTTACCTGTATCTAATGGGTGAAGACTCAAAAGATATAAATGGTCAG
CAGTTAAACGCGCAATAA

Upstream 100 bases:

>100_bases
ATTGAGCGAGCAAAGATTAATCGTTTGTTTAAAACAGCTGTTTATCATATCAGCGACTCTAGAAGTGACGGGCGTTTGCG
CTCTGAGGAAGTATTAACTC

Downstream 100 bases:

>100_bases
ACTGCTCTTTACTGTAAACACATTTCAGGACAAGACATTATATACAAAAAGGCCGCTAAAATAGCGGCCTTTTAAATGCG
TTTTGTTCGACTATCTCTAG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLEYQAAKDLLKDKTILVTGAGDGIGKAAAIAFAKHGATVILLGKTVKKLEAVYDQIEQAGYPTPAIVPLDLKGATEQNY
KDMADTIEEQFGQLDGLLHNASVLGVLGPFEHMTMSTVNEVMQVNVIAEIMLTKALLPVMRKSPSASLLFTSSSVGRQGR
AYWGEYAISKFATEGMMQSLAHEYEDTNVRVNSINPGATRTGMRANAYPAENPQTLKAPDEIMATYLYLMGEDSKDINGQ
QLNAQ

Sequences:

>Translated_245_residues
MLEYQAAKDLLKDKTILVTGAGDGIGKAAAIAFAKHGATVILLGKTVKKLEAVYDQIEQAGYPTPAIVPLDLKGATEQNY
KDMADTIEEQFGQLDGLLHNASVLGVLGPFEHMTMSTVNEVMQVNVIAEIMLTKALLPVMRKSPSASLLFTSSSVGRQGR
AYWGEYAISKFATEGMMQSLAHEYEDTNVRVNSINPGATRTGMRANAYPAENPQTLKAPDEIMATYLYLMGEDSKDINGQ
QLNAQ
>Mature_245_residues
MLEYQAAKDLLKDKTILVTGAGDGIGKAAAIAFAKHGATVILLGKTVKKLEAVYDQIEQAGYPTPAIVPLDLKGATEQNY
KDMADTIEEQFGQLDGLLHNASVLGVLGPFEHMTMSTVNEVMQVNVIAEIMLTKALLPVMRKSPSASLLFTSSSVGRQGR
AYWGEYAISKFATEGMMQSLAHEYEDTNVRVNSINPGATRTGMRANAYPAENPQTLKAPDEIMATYLYLMGEDSKDINGQ
QLNAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI157739938, Length=209, Percent_Identity=30.622009569378, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI20149619, Length=254, Percent_Identity=28.740157480315, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=29.1005291005291, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=27.1028037383178, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=25.7142857142857, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40548397, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI214010158, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI214010156, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI22758144, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4504505, Length=235, Percent_Identity=27.2340425531915, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI223718074, Length=212, Percent_Identity=26.8867924528302, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=24.0963855421687, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=30.7291666666667, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=30.7291666666667, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI210032110, Length=217, Percent_Identity=24.4239631336406, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4557649, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=21.7054263565891, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI142976729, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=24.4897959183673, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19743808, Length=231, Percent_Identity=26.8398268398268, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI126723191, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI33667109, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI109715829, Length=223, Percent_Identity=26.457399103139, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=53.2786885245902, Blast_Score=248, Evalue=3e-67,
Organism=Escherichia coli, GI87082100, Length=209, Percent_Identity=34.4497607655502, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=28.5123966942149, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=29.4605809128631, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=26.1410788381743, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786701, Length=206, Percent_Identity=27.1844660194175, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=204, Percent_Identity=30.3921568627451, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=30.1507537688442, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=32.0855614973262, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.4568527918782, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=29.2079207920792, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=195, Percent_Identity=29.7435897435897, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=200, Percent_Identity=28, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=29.3532338308458, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=193, Percent_Identity=30.5699481865285, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=200, Percent_Identity=27.5, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=245, Percent_Identity=24.4897959183673, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=30.0518134715026, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=241, Percent_Identity=29.4605809128631, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=25.4980079681275, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=199, Percent_Identity=27.1356783919598, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=29.6875, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=196, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=200, Percent_Identity=26, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=188, Percent_Identity=27.6595744680851, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=213, Percent_Identity=30.9859154929577, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=218, Percent_Identity=25.2293577981651, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=197, Percent_Identity=26.3959390862944, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=198, Percent_Identity=24.2424242424242, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=218, Percent_Identity=28.8990825688073, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=215, Percent_Identity=29.3023255813954, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=239, Percent_Identity=32.2175732217573, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=29.1497975708502, Blast_Score=79, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21358495, Length=210, Percent_Identity=30.4761904761905, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=33.5051546391753, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI23397609, Length=200, Percent_Identity=35, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.4878048780488, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28571526, Length=193, Percent_Identity=32.1243523316062, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=25, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI21357041, Length=206, Percent_Identity=31.0679611650485, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356301, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI45553409, Length=218, Percent_Identity=28.4403669724771, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647948, Length=218, Percent_Identity=28.4403669724771, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647946, Length=218, Percent_Identity=28.4403669724771, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007234, Length=238, Percent_Identity=25.6302521008403, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=25.2475247524752, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=250, Percent_Identity=24.8, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=216, Percent_Identity=25.462962962963, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281364892, Length=195, Percent_Identity=25.1282051282051, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26534; Mature: 26534

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLEYQAAKDLLKDKTILVTGAGDGIGKAAAIAFAKHGATVILLGKTVKKLEAVYDQIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPTPAIVPLDLKGATEQNYKDMADTIEEQFGQLDGLLHNASVLGVLGPFEHMTMSTVNE
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHH
VMQVNVIAEIMLTKALLPVMRKSPSASLLFTSSSVGRQGRAYWGEYAISKFATEGMMQSL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AHEYEDTNVRVNSINPGATRTGMRANAYPAENPQTLKAPDEIMATYLYLMGEDSKDINGQ
HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
QLNAQ
CCCCC
>Mature Secondary Structure
MLEYQAAKDLLKDKTILVTGAGDGIGKAAAIAFAKHGATVILLGKTVKKLEAVYDQIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPTPAIVPLDLKGATEQNYKDMADTIEEQFGQLDGLLHNASVLGVLGPFEHMTMSTVNE
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHH
VMQVNVIAEIMLTKALLPVMRKSPSASLLFTSSSVGRQGRAYWGEYAISKFATEGMMQSL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AHEYEDTNVRVNSINPGATRTGMRANAYPAENPQTLKAPDEIMATYLYLMGEDSKDINGQ
HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
QLNAQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]