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The map label for this gene is rbcR [H]

Identifier: 157961456

GI number: 157961456

Start: 1975184

End: 1976077

Strand: Reverse

Name: rbcR [H]

Synonym: Spea_1630

Alternate gene names: 157961456

Gene position: 1976077-1975184 (Counterclockwise)

Preceding gene: 157961459

Following gene: 157961455

Centisome position: 38.19

GC content: 43.85

Gene sequence:

>894_bases
ATGCTCAACCCTATTTGGTTAAAGACTTTTACAACCCTTATCGAGACAGGCCATTTCACTCAAACCGCAGAAAAGCTGTT
TATGACCCAACCCGGAGTCAGCCAACAGATTAAAAAGCTTGAGCAGGCCTGTGGCTACTCTCTGATTAAAAGAGTGAATA
AGCAGTTTGAAATTACTGAGCAAGGCAGGCTGGTCTACGAGCACGCTCAACGGATGGCGCAGCAAGAAATTGAACTAATA
GAAAATCTAGCCTTTGATGATCCTTACTCGGGCCAATGCCGTTTATCTTGTTCAGGCGCTTTAGCACTTCTGTATTACCC
AAAGTTACTCAAACTGCAGCAGGAACATCCGGCGCTGGCTATGCATTTAGAGGCGGCACCAAACTATAGAATACTAAAAG
ATATTACCGAAGGAACAATCGACATCGGCGTAGTCACCCAACTCCCAAACTTAGGTGAGTTCAACTTTGAAGCCATAGGT
CTTGAACCACTTTGTCTTATCATGCCAAAGCAGTATCAAAATAGAGTGATTGATCCTCAATGCCTAATGCAATGTGGAGT
TGTTAATCACCCTGATGCTGCGCACTACTTATCACGCTACTTCGAACTATGCGCAAATCCAGAGCTTGCACAGGTGAATA
TCAACCAACTCCCCATGACCAGTTATGTTAATCAGCTCAGTCAGATCTTGTTGCCAATCTCCCAAGGACTAGGTTTTACC
GTACTCCCAAAAAGTGCATTAGACAGTTTTGCCGATAGAGATCAGCTGCATGTACATAGCCCAGATACAGCCGTTACTGA
GTCACTGTATTTAGTCTCTAAACGAAATCGTGAGCTAGCTGCGCGTTATCTTGCCGTGAAAAACATTTTAAAAGCGAGTC
ACTCAATACCATAA

Upstream 100 bases:

>100_bases
TAAATATAGGGTTATCCTATTCTCTTATTTTGATAATTTTTTGTTATCATTGATTTTGGACTGTATGCTTAGCAAGACGG
CTGTAAGCTCGGAGAACCCT

Downstream 100 bases:

>100_bases
CAACTCAGGCTAATCTTATATTCTTAGCGTAGGCATTATGTATTGTTAAAGATGGTAATTGGTTAGGTTTGATCTTTACT
TGATTCAGTACGAGAAGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLNPIWLKTFTTLIETGHFTQTAEKLFMTQPGVSQQIKKLEQACGYSLIKRVNKQFEITEQGRLVYEHAQRMAQQEIELI
ENLAFDDPYSGQCRLSCSGALALLYYPKLLKLQQEHPALAMHLEAAPNYRILKDITEGTIDIGVVTQLPNLGEFNFEAIG
LEPLCLIMPKQYQNRVIDPQCLMQCGVVNHPDAAHYLSRYFELCANPELAQVNINQLPMTSYVNQLSQILLPISQGLGFT
VLPKSALDSFADRDQLHVHSPDTAVTESLYLVSKRNRELAARYLAVKNILKASHSIP

Sequences:

>Translated_297_residues
MLNPIWLKTFTTLIETGHFTQTAEKLFMTQPGVSQQIKKLEQACGYSLIKRVNKQFEITEQGRLVYEHAQRMAQQEIELI
ENLAFDDPYSGQCRLSCSGALALLYYPKLLKLQQEHPALAMHLEAAPNYRILKDITEGTIDIGVVTQLPNLGEFNFEAIG
LEPLCLIMPKQYQNRVIDPQCLMQCGVVNHPDAAHYLSRYFELCANPELAQVNINQLPMTSYVNQLSQILLPISQGLGFT
VLPKSALDSFADRDQLHVHSPDTAVTESLYLVSKRNRELAARYLAVKNILKASHSIP
>Mature_297_residues
MLNPIWLKTFTTLIETGHFTQTAEKLFMTQPGVSQQIKKLEQACGYSLIKRVNKQFEITEQGRLVYEHAQRMAQQEIELI
ENLAFDDPYSGQCRLSCSGALALLYYPKLLKLQQEHPALAMHLEAAPNYRILKDITEGTIDIGVVTQLPNLGEFNFEAIG
LEPLCLIMPKQYQNRVIDPQCLMQCGVVNHPDAAHYLSRYFELCANPELAQVNINQLPMTSYVNQLSQILLPISQGLGFT
VLPKSALDSFADRDQLHVHSPDTAVTESLYLVSKRNRELAARYLAVKNILKASHSIP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=22.4913494809689, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789639, Length=268, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=22.8915662650602, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788481, Length=140, Percent_Identity=27.1428571428571, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33512; Mature: 33512

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPIWLKTFTTLIETGHFTQTAEKLFMTQPGVSQQIKKLEQACGYSLIKRVNKQFEITE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECC
QGRLVYEHAQRMAQQEIELIENLAFDDPYSGQCRLSCSGALALLYYPKLLKLQQEHPALA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEE
MHLEAAPNYRILKDITEGTIDIGVVTQLPNLGEFNFEAIGLEPLCLIMPKQYQNRVIDPQ
EEECCCCCHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEECCCCEEEECCCHHHCCCCCHH
CLMQCGVVNHPDAAHYLSRYFELCANPELAQVNINQLPMTSYVNQLSQILLPISQGLGFT
HHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
VLPKSALDSFADRDQLHVHSPDTAVTESLYLVSKRNRELAARYLAVKNILKASHSIP
EECHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNPIWLKTFTTLIETGHFTQTAEKLFMTQPGVSQQIKKLEQACGYSLIKRVNKQFEITE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECC
QGRLVYEHAQRMAQQEIELIENLAFDDPYSGQCRLSCSGALALLYYPKLLKLQQEHPALA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEE
MHLEAAPNYRILKDITEGTIDIGVVTQLPNLGEFNFEAIGLEPLCLIMPKQYQNRVIDPQ
EEECCCCCHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEECCCCEEEECCCHHHCCCCCHH
CLMQCGVVNHPDAAHYLSRYFELCANPELAQVNINQLPMTSYVNQLSQILLPISQGLGFT
HHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
VLPKSALDSFADRDQLHVHSPDTAVTESLYLVSKRNRELAARYLAVKNILKASHSIP
EECHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]