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The map label for this gene is yjcR [C]

Identifier: 157961388

GI number: 157961388

Start: 1895838

End: 1897193

Strand: Direct

Name: yjcR [C]

Synonym: Spea_1562

Alternate gene names: 157961388

Gene position: 1895838-1897193 (Clockwise)

Preceding gene: 157961387

Following gene: 157961389

Centisome position: 36.64

GC content: 50.37

Gene sequence:

>1356_bases
ATGTCGGCATTTAAGGGGAAGCGATGGTATTTCTTTCCTGCGGTCGCCGTGGGTTTTGTGGTGTTGGTGTTAGTGGTCAA
GTTGCGTAGCCACCCACCATTAGAGTTGCAGGCAGAGCCGAGTAAGTTGGTCGAGGTGATCTCTCTAGAGAAAAGCCCTG
TGGTGGTACAAGTCGATGCCTTTGGCCGTGTAAGTCCTAAAATTCAATGGCAGTTACTGCCTGAAGTCGGTGGCCGCGTG
GTGTACAAGCACCCAGATCTTGCCGTGGGGAAAATCCTTGCCAAAGATACCTTACTGCTGGCTATCGATCCGCTGGATTA
TCAAATTCGTCTGGCTCAAGCTCAGGCTGATCGTAAGGCCCTAGAGGGTCAGATAGAAGGTAAGAAGCTACAACTTGAAA
ACCTTAAGTTATCGCTTGAGATTGAAAATAATCGCTATGACTTAGTCAAATCTGACTTAAAGCGTAAAGAGACACTGCGT
AAGCAAAATCTTATCTCTCAGTCTGAACTCGATGGCGAGCGGCAGAACCTACTGGCTCAGCAGCAAAAGCTACAAGAGTT
AGATAATAGTCTGAACTTGATGCCAAACGAGACGCAAATTCTTCAAGCTCAACTGCTGCAAGCGATTGCTCGTGAGCAGG
AAGCACAGAGTCAGTTAACCAAGACGGAGATTCGCCTGCCATTTGAAGGCCGTGTGGCCGAGGTCAATGTTGAAGGTAGT
CAGGTGGTATCGCCGCAGCAGGTGCTTGCACGCATCAATGGCATCGAGGTGATGGAGGTCGAGGCGCAGGTGTCGCTAGG
TGATGTGATGACACTGATGAAAACAGTTAACAGGCCACAAGGGCAAGATAAGCAATTACCCCGAGCTGAAGCCTTGGGCT
TAACCGCCGAGATCACCCTAAAAGGTGCGACTTACTCCTTTAGTTGGCCGGCTGAAATTACCCGTATAGGTGAAACGGTC
GATCCTACCTTGGCCACGGTAAATATTGTGCTACAGGTAGAGCAGCAGTACCGCGAGCTTAAAATTGGTCAGTCACCACC
ATTGGTGAATGGCATGTTTGTTAGTGCCCGAATTAAAGGCGGCGAGCGTGACTACTGGATGGTACCCGAGCGAGCACTAC
ACGGTGAAAAACTCTATATCAAGGATCAAGACAATCGCCTCGAACTTGTGGATGTTCAGGTGCTGTTCCGTCAAGAGGGG
CAAGCGGCGGTGCAGGGCAATCTCGTTGAGGGCATGCAGTTAGTATTAACTGACCTTATTCCAGCGGTTAACGGCATGGC
GCTACGCATTCGAGCAGATGACGCGACAGGAGCTGACCTGAGTACTGAACAAGCGGCTGGGGAGATGCTGCCGTGA

Upstream 100 bases:

>100_bases
CAAAACTGCACGGTTATCAACTTAATGATGAATTTTATACTCAATTGGCCAAACACAATATTGCACTTATCCAGCACGGA
CTCTTTGGAGGTCAGCAATA

Downstream 100 bases:

>100_bases
TTGGATTTTTCGTTCGTCACCCCACGGCGACGTCTTTGTTGATGTTGGCCTTTATCGTACTGGGTATTAAAGCGCTGCCA
GAGCTTAAGCGCGAGACATT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Membrane-Fusion Protein; HlyD Family Secretion Protein; Secretion Protein HlyD; Auxiliary Transport Protein MFP Family; Efflux Transporter; Acriflavin Resistance Periplasmic Protein

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSAFKGKRWYFFPAVAVGFVVLVLVVKLRSHPPLELQAEPSKLVEVISLEKSPVVVQVDAFGRVSPKIQWQLLPEVGGRV
VYKHPDLAVGKILAKDTLLLAIDPLDYQIRLAQAQADRKALEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLR
KQNLISQSELDGERQNLLAQQQKLQELDNSLNLMPNETQILQAQLLQAIAREQEAQSQLTKTEIRLPFEGRVAEVNVEGS
QVVSPQQVLARINGIEVMEVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITLKGATYSFSWPAEITRIGETV
DPTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKGGERDYWMVPERALHGEKLYIKDQDNRLELVDVQVLFRQEG
QAAVQGNLVEGMQLVLTDLIPAVNGMALRIRADDATGADLSTEQAAGEMLP

Sequences:

>Translated_451_residues
MSAFKGKRWYFFPAVAVGFVVLVLVVKLRSHPPLELQAEPSKLVEVISLEKSPVVVQVDAFGRVSPKIQWQLLPEVGGRV
VYKHPDLAVGKILAKDTLLLAIDPLDYQIRLAQAQADRKALEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLR
KQNLISQSELDGERQNLLAQQQKLQELDNSLNLMPNETQILQAQLLQAIAREQEAQSQLTKTEIRLPFEGRVAEVNVEGS
QVVSPQQVLARINGIEVMEVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITLKGATYSFSWPAEITRIGETV
DPTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKGGERDYWMVPERALHGEKLYIKDQDNRLELVDVQVLFRQEG
QAAVQGNLVEGMQLVLTDLIPAVNGMALRIRADDATGADLSTEQAAGEMLP
>Mature_450_residues
SAFKGKRWYFFPAVAVGFVVLVLVVKLRSHPPLELQAEPSKLVEVISLEKSPVVVQVDAFGRVSPKIQWQLLPEVGGRVV
YKHPDLAVGKILAKDTLLLAIDPLDYQIRLAQAQADRKALEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLRK
QNLISQSELDGERQNLLAQQQKLQELDNSLNLMPNETQILQAQLLQAIAREQEAQSQLTKTEIRLPFEGRVAEVNVEGSQ
VVSPQQVLARINGIEVMEVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITLKGATYSFSWPAEITRIGETVD
PTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKGGERDYWMVPERALHGEKLYIKDQDNRLELVDVQVLFRQEGQ
AAVQGNLVEGMQLVLTDLIPAVNGMALRIRADDATGADLSTEQAAGEMLP

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50238; Mature: 50107

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFKGKRWYFFPAVAVGFVVLVLVVKLRSHPPLELQAEPSKLVEVISLEKSPVVVQVDA
CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCEEEEEEC
FGRVSPKIQWQLLPEVGGRVVYKHPDLAVGKILAKDTLLLAIDPLDYQIRLAQAQADRKA
CCCCCCCEEEEEEHHHCCEEEEECCCHHHHHHHHCCEEEEEECCCCEEEEEEHHHHHHHH
LEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLRKQNLISQSELDGERQNLLAQ
HCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
QQKLQELDNSLNLMPNETQILQAQLLQAIAREQEAQSQLTKTEIRLPFEGRVAEVNVEGS
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCC
QVVSPQQVLARINGIEVMEVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITL
CCCCHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEEEEE
KGATYSFSWPAEITRIGETVDPTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKG
ECCEEEEECCHHHHHCCCCCCCCCEEEEEEEEEHHHHHHCCCCCCCCCCCEEEEEEEECC
GERDYWMVPERALHGEKLYIKDQDNRLELVDVQVLFRQEGQAAVQGNLVEGMQLVLTDLI
CCCCEEECCHHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHHCCCCHHHHHHHHHHHHH
PAVNGMALRIRADDATGADLSTEQAAGEMLP
HCCCCEEEEEEECCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
SAFKGKRWYFFPAVAVGFVVLVLVVKLRSHPPLELQAEPSKLVEVISLEKSPVVVQVDA
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCEEEEEEC
FGRVSPKIQWQLLPEVGGRVVYKHPDLAVGKILAKDTLLLAIDPLDYQIRLAQAQADRKA
CCCCCCCEEEEEEHHHCCEEEEECCCHHHHHHHHCCEEEEEECCCCEEEEEEHHHHHHHH
LEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLRKQNLISQSELDGERQNLLAQ
HCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
QQKLQELDNSLNLMPNETQILQAQLLQAIAREQEAQSQLTKTEIRLPFEGRVAEVNVEGS
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCC
QVVSPQQVLARINGIEVMEVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITL
CCCCHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEEEEE
KGATYSFSWPAEITRIGETVDPTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKG
ECCEEEEECCHHHHHCCCCCCCCCEEEEEEEEEHHHHHHCCCCCCCCCCCEEEEEEEECC
GERDYWMVPERALHGEKLYIKDQDNRLELVDVQVLFRQEGQAAVQGNLVEGMQLVLTDLI
CCCCEEECCHHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHHCCCCHHHHHHHHHHHHH
PAVNGMALRIRADDATGADLSTEQAAGEMLP
HCCCCEEEEEEECCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA