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The map label for this gene is yibH [H]

Identifier: 157961378

GI number: 157961378

Start: 1887593

End: 1888642

Strand: Direct

Name: yibH [H]

Synonym: Spea_1552

Alternate gene names: 157961378

Gene position: 1887593-1888642 (Clockwise)

Preceding gene: 157961377

Following gene: 157961379

Centisome position: 36.48

GC content: 46.67

Gene sequence:

>1050_bases
ATGAAAGATAAAATATACCAATATATTAGCTATGCAGTACTGGGTTTAGCCGTACTGTTTTCGCTGTTTTTGGTCACAAC
AGACAATATCGCTCCCTTCACGACACAGGCTGCTGTGCAAAAGAACGTGGCGACAATTGCCGCCGAAGTTGAGGGCGTTG
TGACTCAGGTTTATGTCAAAAATGGCCAGCAAGTGAGTAAAGGGCAAGCATTATTTTCAATCGATCAAAGCCGATACCTT
ATTGCGGTAAAACAAGCACAGGCTGAGCTTGACCAAGCACTGGAGTCCAATTCTGCAAAAGGACAAGAGCTGGTCTCGGC
TGAGCAGCTTACCTCCCAACGAGCCTTAGAGAAATTGAATGCCAGCCGTAAGATGAAGCGATATGAGTCATTATTGAAGC
AGGGTACGGTTACTCAGCAAGAGTTAGAAGATACACAGCTGGCTTATAAAGTATCTGTCAGCACTGAGTCAGCGGCCAAA
GCCGAAGTGAAGCGTATTCAGGTTGAGCTGGCAACAGAGCAAGATAATGCAGCGATTGAACTCGCTAAGGCTAAGCTGGC
TCAGGCTCAACTCGATCTTGAACATACCGTCATTAAAGCCAAGCTTGCGGGTTCAGTGAGCAATTTGCAGCTGCAAACGG
GAAGCTACTTAGCTGCAGGGGCCAGTGCAATGTTTGTAGTCAGTGATCAAGACACTTGGCTCAGTGCGGACTTCAATGAA
AAAGGCATTGCTCACCTTAAAGCTGGCGCCCGAGTAGCTGTGGTTTTCGATGCACTGCCGGGCAAAGTGTTTCAGGGAAA
AATACTTAATCAAGACAGTGCAATTTATGATGCATCGAGTCAGCTCGGTCAGCTAGCCGATGTGACTAACAGTGATCGCT
GGATCAGAGAACAGCAGAAAATTCGCACTCGCATCAGCGTCAATGAGCAAAACCCGCAACTGATTTCGGGTTCTAGAGCC
AGTGTGATGGTAGAAAATGGTAATTGGCTGGTGGATACTTGCGCCAAGCTCTGGATGCACTTAGTGAGCTATTTTCACTA
TATATATTGA

Upstream 100 bases:

>100_bases
AGAGCTAAGGAAAGAGCTAAGGAAAGAGCGAGCAAGATTAAGTCTAGGCTGCAGTGAAACAGGCTAAAGATGCTAGAGCA
GCGATATTTGCGGAGAGAAG

Downstream 100 bases:

>100_bases
GGCTAGCTAATTGCCCATTTATTAAACTTTAGTGGGGAGCCCTAATGTATTCATCAAAGAACATCTGTGGATTTGAGAAT
GTTTGAGCCTATAGCAAACA

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKDKIYQYISYAVLGLAVLFSLFLVTTDNIAPFTTQAAVQKNVATIAAEVEGVVTQVYVKNGQQVSKGQALFSIDQSRYL
IAVKQAQAELDQALESNSAKGQELVSAEQLTSQRALEKLNASRKMKRYESLLKQGTVTQQELEDTQLAYKVSVSTESAAK
AEVKRIQVELATEQDNAAIELAKAKLAQAQLDLEHTVIKAKLAGSVSNLQLQTGSYLAAGASAMFVVSDQDTWLSADFNE
KGIAHLKAGARVAVVFDALPGKVFQGKILNQDSAIYDASSQLGQLADVTNSDRWIREQQKIRTRISVNEQNPQLISGSRA
SVMVENGNWLVDTCAKLWMHLVSYFHYIY

Sequences:

>Translated_349_residues
MKDKIYQYISYAVLGLAVLFSLFLVTTDNIAPFTTQAAVQKNVATIAAEVEGVVTQVYVKNGQQVSKGQALFSIDQSRYL
IAVKQAQAELDQALESNSAKGQELVSAEQLTSQRALEKLNASRKMKRYESLLKQGTVTQQELEDTQLAYKVSVSTESAAK
AEVKRIQVELATEQDNAAIELAKAKLAQAQLDLEHTVIKAKLAGSVSNLQLQTGSYLAAGASAMFVVSDQDTWLSADFNE
KGIAHLKAGARVAVVFDALPGKVFQGKILNQDSAIYDASSQLGQLADVTNSDRWIREQQKIRTRISVNEQNPQLISGSRA
SVMVENGNWLVDTCAKLWMHLVSYFHYIY
>Mature_349_residues
MKDKIYQYISYAVLGLAVLFSLFLVTTDNIAPFTTQAAVQKNVATIAAEVEGVVTQVYVKNGQQVSKGQALFSIDQSRYL
IAVKQAQAELDQALESNSAKGQELVSAEQLTSQRALEKLNASRKMKRYESLLKQGTVTQQELEDTQLAYKVSVSTESAAK
AEVKRIQVELATEQDNAAIELAKAKLAQAQLDLEHTVIKAKLAGSVSNLQLQTGSYLAAGASAMFVVSDQDTWLSADFNE
KGIAHLKAGARVAVVFDALPGKVFQGKILNQDSAIYDASSQLGQLADVTNSDRWIREQQKIRTRISVNEQNPQLISGSRA
SVMVENGNWLVDTCAKLWMHLVSYFHYIY

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=356, Percent_Identity=27.5280898876405, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1790012, Length=356, Percent_Identity=27.8089887640449, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790519, Length=315, Percent_Identity=27.3015873015873, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87081951, Length=329, Percent_Identity=25.531914893617, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789637, Length=317, Percent_Identity=26.1829652996845, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788711, Length=288, Percent_Identity=26.7361111111111, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789041, Length=308, Percent_Identity=24.025974025974, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87082036, Length=312, Percent_Identity=26.9230769230769, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 38315; Mature: 38315

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKIYQYISYAVLGLAVLFSLFLVTTDNIAPFTTQAAVQKNVATIAAEVEGVVTQVYVK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
NGQQVSKGQALFSIDQSRYLIAVKQAQAELDQALESNSAKGQELVSAEQLTSQRALEKLN
CCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ASRKMKRYESLLKQGTVTQQELEDTQLAYKVSVSTESAAKAEVKRIQVELATEQDNAAIE
HHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEECCCHHHHHHHHHEEEEEECCCCCCHHH
LAKAKLAQAQLDLEHTVIKAKLAGSVSNLQLQTGSYLAAGASAMFVVSDQDTWLSADFNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEEEECCCCEEECCCCC
KGIAHLKAGARVAVVFDALPGKVFQGKILNQDSAIYDASSQLGQLADVTNSDRWIREQQK
CCCHHHCCCCEEEEEEECCCCCEEECEEECCCCHHCCCHHHHHHHHHCCCCHHHHHHHHH
IRTRISVNEQNPQLISGSRASVMVENGNWLVDTCAKLWMHLVSYFHYIY
HHHHEEECCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKDKIYQYISYAVLGLAVLFSLFLVTTDNIAPFTTQAAVQKNVATIAAEVEGVVTQVYVK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
NGQQVSKGQALFSIDQSRYLIAVKQAQAELDQALESNSAKGQELVSAEQLTSQRALEKLN
CCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ASRKMKRYESLLKQGTVTQQELEDTQLAYKVSVSTESAAKAEVKRIQVELATEQDNAAIE
HHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEECCCHHHHHHHHHEEEEEECCCCCCHHH
LAKAKLAQAQLDLEHTVIKAKLAGSVSNLQLQTGSYLAAGASAMFVVSDQDTWLSADFNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEEEECCCCEEECCCCC
KGIAHLKAGARVAVVFDALPGKVFQGKILNQDSAIYDASSQLGQLADVTNSDRWIREQQK
CCCHHHCCCCEEEEEEECCCCCEEECEEECCCCHHCCCHHHHHHHHHCCCCHHHHHHHHH
IRTRISVNEQNPQLISGSRASVMVENGNWLVDTCAKLWMHLVSYFHYIY
HHHHEEECCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]