Click here to switch to the map view.

The map label for this gene is ydgJ [C]

Identifier: 157961291

GI number: 157961291

Start: 1787864

End: 1789234

Strand: Reverse

Name: ydgJ [C]

Synonym: Spea_1465

Alternate gene names: 157961291

Gene position: 1789234-1787864 (Counterclockwise)

Preceding gene: 157961293

Following gene: 157961283

Centisome position: 34.58

GC content: 47.85

Gene sequence:

>1371_bases
ATGAAACTTAATCGCCGACATTTTTTGAAAACAGCCGGTCTCTCAGCAGCAGGGATCCTCACCTCGCAACTTCCATTATC
ATCTGCAGAAGCTGTTCCCAAAAAGCCCGCTGCTGGCCCGTCAGTAATGGGTTTAGTCGTGCCCAAAATGGATACTGTTA
GAGTTGGCTTTATCGGTGTAGGTCAACGCGGTTCGGGCCATGTAAAACATTTTTGTCATCTAGATGGGGTTGAGATCAAA
GCCATTTGCGATACCGATCCCCAAGTATTAGACGAATCGATTCAATTCGTAACGACTCAAGGACTCCCTAAGCCAGCCCA
ATATACGGGCAGTGAACAAGCCTATAAAGATTTACTTAATCGCGATGACATCGATATTGTGATTATCTCGACCCCATGGG
AGTGGCATGCTCCCATGGCCATCAACACCATGGAGAGTGGCAAGCACGCCTTTGTTGAGGTGCCCCTAGCGTTGACCGTC
GATGAGTGCTGGCAAATCGTCGACACCGCAGAACGTACCCAGAAGAATTGCATGATGATGGAAAACGTTAACTACGGAAG
AGACGAATTGATGGTACTCAATATGGTTCGTCAGGGCTTATTTGGCGAATTGCTCCATGGAGAGGCCGCTTATATCCATG
AACTTCGCTGGCAGATGAAGGAGATCGACAGCAAAACGGGTTCTTGGCGTACATACTGGCACACTAAACGAAATGGCAAC
CTGTATCCAACCCATGGTTTAGGCCCAGTTTCCCAGTATATGAATATTAATCGCGGTGACAGATTCGATTATCTGACTTC
GATGAGCTCCCCAGCTCTGGGTCGTGGCTTATACGCAAAGCGTGAATTCCCAGCCGATCATGAACGCAACCAGCTCGACT
ACATCAACGGTGATATCAATACCTCTCTTATAAAAACGGTAAAAGGCCGTACCATCATGGTTCAGCACGATACTACGACC
CCACGCCCCTATAGTCGTCACAACCTTATTCAAGGCACTAATGGCGTGTTTGCGGGCTTTCCTAACCGCATCGCTATTGA
ACAGGCAGGCTCTGATAGCTACCACAAGTGGGATATGGATATGGCAAAATGGTATGCCAAGTATGATCACCCTCTATGGC
TACAGATGGGACAAGAAGCTGAGCGTAATGGGGGGCATGGCGGCATGGACTTTTTAATGCTGTGGCGCATGGTCTATTGC
TTAAGAAATAGCGAACCATTAGATCAAGATGTTTATGACGGTACAGCTTGGTCTGTAGTGAATATTCTCAGCCAAGAGTC
GGTCAATAACCGCAGTAACTCGGTGAATTTTCCAGACTTCACTCGCGGAGCATGGAAAACGGGGAAGCCTCTCGGTATTA
TCGGCACTTAA

Upstream 100 bases:

>100_bases
GTGCTACAAATTGATATACTTGCTTTTAACCTTTTATCTACCGAATTTGATATAACTCTTAGGGTCAAACCTATTCTAAT
AAAATCGCCCAGGACTTAAG

Downstream 100 bases:

>100_bases
GCAAGCGAAGTGTTCCTTTCAATATAAAACTCTTATGCCCTACAGCTGATAGACTCGCAAACAAAAAAAAAGCCCGCTCA
CATAGTGAGCGGGCTTTTCG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MKLNRRHFLKTAGLSAAGILTSQLPLSSAEAVPKKPAAGPSVMGLVVPKMDTVRVGFIGVGQRGSGHVKHFCHLDGVEIK
AICDTDPQVLDESIQFVTTQGLPKPAQYTGSEQAYKDLLNRDDIDIVIISTPWEWHAPMAINTMESGKHAFVEVPLALTV
DECWQIVDTAERTQKNCMMMENVNYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDSKTGSWRTYWHTKRNGN
LYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRGLYAKREFPADHERNQLDYINGDINTSLIKTVKGRTIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIAIEQAGSDSYHKWDMDMAKWYAKYDHPLWLQMGQEAERNGGHGGMDFLMLWRMVYC
LRNSEPLDQDVYDGTAWSVVNILSQESVNNRSNSVNFPDFTRGAWKTGKPLGIIGT

Sequences:

>Translated_456_residues
MKLNRRHFLKTAGLSAAGILTSQLPLSSAEAVPKKPAAGPSVMGLVVPKMDTVRVGFIGVGQRGSGHVKHFCHLDGVEIK
AICDTDPQVLDESIQFVTTQGLPKPAQYTGSEQAYKDLLNRDDIDIVIISTPWEWHAPMAINTMESGKHAFVEVPLALTV
DECWQIVDTAERTQKNCMMMENVNYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDSKTGSWRTYWHTKRNGN
LYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRGLYAKREFPADHERNQLDYINGDINTSLIKTVKGRTIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIAIEQAGSDSYHKWDMDMAKWYAKYDHPLWLQMGQEAERNGGHGGMDFLMLWRMVYC
LRNSEPLDQDVYDGTAWSVVNILSQESVNNRSNSVNFPDFTRGAWKTGKPLGIIGT
>Mature_456_residues
MKLNRRHFLKTAGLSAAGILTSQLPLSSAEAVPKKPAAGPSVMGLVVPKMDTVRVGFIGVGQRGSGHVKHFCHLDGVEIK
AICDTDPQVLDESIQFVTTQGLPKPAQYTGSEQAYKDLLNRDDIDIVIISTPWEWHAPMAINTMESGKHAFVEVPLALTV
DECWQIVDTAERTQKNCMMMENVNYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDSKTGSWRTYWHTKRNGN
LYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRGLYAKREFPADHERNQLDYINGDINTSLIKTVKGRTIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIAIEQAGSDSYHKWDMDMAKWYAKYDHPLWLQMGQEAERNGGHGGMDFLMLWRMVYC
LRNSEPLDQDVYDGTAWSVVNILSQESVNNRSNSVNFPDFTRGAWKTGKPLGIIGT

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

Organism=Escherichia coli, GI87081947, Length=172, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GH109_SHEPA (A8H2K3)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001501325.1
- ProteinModelPortal:   A8H2K3
- SMR:   A8H2K3
- STRING:   A8H2K3
- GeneID:   5661862
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_1465
- NMPDR:   fig|398579.3.peg.1269
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   TGSWRTY
- ProtClustDB:   CLSK901939
- BioCyc:   SPEA398579:SPEA_1465-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 51368; Mature: 51368

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS51318 TAT

Important sites: BINDING 84-84 BINDING 182-182 BINDING 211-211 BINDING 230-230 BINDING 242-242 BINDING 324-324

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNRRHFLKTAGLSAAGILTSQLPLSSAEAVPKKPAAGPSVMGLVVPKMDTVRVGFIGV
CCCCHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
GQRGSGHVKHFCHLDGVEIKAICDTDPQVLDESIQFVTTQGLPKPAQYTGSEQAYKDLLN
CCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHC
RDDIDIVIISTPWEWHAPMAINTMESGKHAFVEVPLALTVDECWQIVDTAERTQKNCMMM
CCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHEEEE
ENVNYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDSKTGSWRTYWHTKRNGN
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
LYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRGLYAKREFPADHERNQLDYINGDIN
CCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
TSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAIEQAGSDSYHKWDMD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCEECCHH
MAKWYAKYDHPLWLQMGQEAERNGGHGGMDFLMLWRMVYCLRNSEPLDQDVYDGTAWSVV
HHHHHHHCCCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHH
NILSQESVNNRSNSVNFPDFTRGAWKTGKPLGIIGT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MKLNRRHFLKTAGLSAAGILTSQLPLSSAEAVPKKPAAGPSVMGLVVPKMDTVRVGFIGV
CCCCHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
GQRGSGHVKHFCHLDGVEIKAICDTDPQVLDESIQFVTTQGLPKPAQYTGSEQAYKDLLN
CCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHC
RDDIDIVIISTPWEWHAPMAINTMESGKHAFVEVPLALTVDECWQIVDTAERTQKNCMMM
CCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHEEEE
ENVNYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDSKTGSWRTYWHTKRNGN
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
LYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRGLYAKREFPADHERNQLDYINGDIN
CCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
TSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAIEQAGSDSYHKWDMD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCEECCHH
MAKWYAKYDHPLWLQMGQEAERNGGHGGMDFLMLWRMVYCLRNSEPLDQDVYDGTAWSVV
HHHHHHHCCCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHH
NILSQESVNNRSNSVNFPDFTRGAWKTGKPLGIIGT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA