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The map label for this gene is fliR [H]

Identifier: 157961201

GI number: 157961201

Start: 1668997

End: 1669797

Strand: Direct

Name: fliR [H]

Synonym: Spea_1373

Alternate gene names: 157961201

Gene position: 1668997-1669797 (Clockwise)

Preceding gene: 157961200

Following gene: 157961202

Centisome position: 32.25

GC content: 48.19

Gene sequence:

>801_bases
ATGGAGATCTTACTCGAGACCATCATGGGCGGGATCGCAGGTTATCTGTGGCCACTCACCCGAATTTCTAGCATGTTTAT
GGTGATGGCGGTCTTTGGGGCAACCACCACGCCGACGCGAGTGAGACTCTTGCTGTCGGTGACCGTCACAGCTGCTGTAG
CGCCCGTTTTACCTGCCATGCCAAATATTGATCTATTTTCCTTAAGCGCTGCATTTGTGACCGCTCAGCAGATCATTATC
GGTGTCGCTATGGGCTTTGCTACCTTATTATTGATGCAAACCTTTGTGCTTACCGGTCAGATCATTGGTATGCAGACCAG
CCTTGGTTTTGCGTCAATGGTCGATCCGAGTTCTGGCCAGCAGACCCCGGTCGTGGGTAACTTCTTCTTGCTATTGACCA
CAATGATTTTCTTGGCGGTAGATGGTCATCTTCTGTTAATTAAAATGGTCATCGCCAGCTTCGAGTCGATCCCTGTGTCG
ATGCAGGGCTTAAGTCTGGCAAGTTACCGCTTATTTACCGAATTCGTGGGTTATATGTTTGGCGCCGCATTAACGATGTC
ACTTTCTGCGATTGTGGCACTATTGACGATTAACCTCTCCTTTGGTGTGATGACTCGTGCCTCACCTCAGTTAAATATTT
TCGCTATTGGTTTCCCTGTCACCATGGTGGCGGGCTTATTTATCTTATGGCTAACCCTATCGCCAATCATGTCTCACTTT
GACGAGGTATGGCGTGAAACCCAAATTCTGCTATGTAATGCACTTGAGCTGCAATGTAGTGTCGATGGTGGGCTTAATTG
A

Upstream 100 bases:

>100_bases
TCCAGATGATGATGGACTTCTTCATGCAGATGGTCGATATGATCCCTCAGGTGATAGGTTAAGTATGAGCCTTTACCACA
GCGTTTATCGAACTCGTTAA

Downstream 100 bases:

>100_bases
TGGCGTCGTATTCTGGCTCATTGATGGTGCCGTACTTTGGAATATTGATGGTGCCGTACTCAGAAACATTGATGGTGTCG
TATTCTGGCTCATCGATAGA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MEILLETIMGGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFFLLLTTMIFLAVDGHLLLIKMVIASFESIPVS
MQGLSLASYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHF
DEVWRETQILLCNALELQCSVDGGLN

Sequences:

>Translated_266_residues
MEILLETIMGGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFFLLLTTMIFLAVDGHLLLIKMVIASFESIPVS
MQGLSLASYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHF
DEVWRETQILLCNALELQCSVDGGLN
>Mature_266_residues
MEILLETIMGGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFFLLLTTMIFLAVDGHLLLIKMVIASFESIPVS
MQGLSLASYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHF
DEVWRETQILLCNALELQCSVDGGLN

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=228, Percent_Identity=35.0877192982456, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28596; Mature: 28596

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILLETIMGGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PNIDLFSLSAAFVTAQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHCCCCCCCC
QTPVVGNFFLLLTTMIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYMF
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHF
HHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWRETQILLCNALELQCSVDGGLN
HHHHHHHHHHEEEEEEEEEECCCCCC
>Mature Secondary Structure
MEILLETIMGGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PNIDLFSLSAAFVTAQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHCCCCCCCC
QTPVVGNFFLLLTTMIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYMF
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHF
HHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWRETQILLCNALELQCSVDGGLN
HHHHHHHHHHEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]