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The map label for this gene is fliN [H]

Identifier: 157961197

GI number: 157961197

Start: 1667139

End: 1667519

Strand: Direct

Name: fliN [H]

Synonym: Spea_1369

Alternate gene names: 157961197

Gene position: 1667139-1667519 (Clockwise)

Preceding gene: 157961196

Following gene: 157961198

Centisome position: 32.22

GC content: 45.93

Gene sequence:

>381_bases
ATGAGTACAGATAGCGGTGATGATTGGGCTGCAGCGATGGCTGAGCAAGCAATAGAAGAGGCCAAAGCGGTTGAATTAGA
TGAGTTTAACAGCGACGGAGCACCTTTGAGTGAAGAGGAAGCATCAAAGTTAGATGCGATTATGGATATTCCGGTCACTA
TTTCTATGGAAGTGGGTCGTAGCTTTATCAATATTCGTAACCTACTGCAGTTAAACCAAGGATCAGTGGTGGAGCTTGAC
CGCGTAGCGGGTGAGCCGTTAGATGTTATGGTTAACGGTACCTTGATCGCCCATGGTGAGGTGGTTGTGGTGAATGACAA
ATTTGGTATTCGTCTAACGGATGTGATCAGCCAAACTGAGCGCATCAAAAAGCTCAAGTAA

Upstream 100 bases:

>100_bases
CGAAAAAATTCCAAGACCTGAAACGGTTAAGACAGAGTTGCAGCTCGTGACCCATAAGGGCCGTGCTCGTGAGCGTTCTG
AGATATAAGGTGAAGAGTAA

Downstream 100 bases:

>100_bases
TAAGAACGTTAGTTGAGAGGACGTTAGATGAGTTTCCAATTGGTTTTAGCCAATGCCAGTGCTGTGGCTTCTCAAGCAGA
AGCCCCCGCTTCGCCAACGA

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSTDSGDDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELD
RVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Sequences:

>Translated_126_residues
MSTDSGDDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELD
RVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK
>Mature_125_residues
STDSGDDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDR
VAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=119, Percent_Identity=47.8991596638655, Blast_Score=117, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13686; Mature: 13554

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDSGDDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCH
SFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTE
HHHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHH
RIKKLK
HHHCCC
>Mature Secondary Structure 
STDSGDDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCH
SFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTE
HHHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHH
RIKKLK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]