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The map label for this gene is flgD [H]

Identifier: 157961170

GI number: 157961170

Start: 1635379

End: 1636191

Strand: Direct

Name: flgD [H]

Synonym: Spea_1342

Alternate gene names: 157961170

Gene position: 1635379-1636191 (Clockwise)

Preceding gene: 157961169

Following gene: 157961171

Centisome position: 31.6

GC content: 47.11

Gene sequence:

>813_bases
TTGAGCCTTATTAATCCGCTAACCGCAACGCAGACGGCGCCGAGTCAGACTCCGCAGGCGAATGCTATTTCGCCGCAAAC
AGCTGCTACAGCGACCCAGAGTTCGACTGCATCGGCAACGAACACTGAACAGACATCCACAGGGAATCCATTTCTTGATG
GCTTACGTCTGCCAGAAGAAAATCCTATTCCTGAACCTAATAGTCAGGAGTTGACCCAAGAGGATTTCTTTTCGCTGTTA
AGCCAACAGTTGTCTATGCAAGATCCGTTTAAGCCTGTTGAAAATGATCAGATGATCCAGCAGATGGCTTCTTTTTCAAC
CGTAGATGGGATCAGCAAGCTCAATGAAGAGATTATTAATCTCAATGCATTAACCAGTTCGAGTCAGGCGTTACAGGCAT
CAGGTCTTGTTGGCCAAAAGGTGCTGATCCCGTCTGACACCGCACATATATCGGCTGAAGATCCGAGTATGAAGGGCATC
ATAAGTACGCCAGAGCCTATTGAATCTGTCATTGTTCGTATTGAGGACGAAAAAGGTCAGCTCATCACAACTTACAATGT
GGATGGCAGTGCTGGTGGCAATATCGATGTGAGCTGGGATGGTTTAGATAAGAACGGTGAGCCTGTTGCGGAGGGGAACT
ATACCTTCAAAGCCAGCGGCAAGGTAGGTGGTACAAGCGAAGAGCTACCTGTATCGACTTATGCTCATGTTACTAGTGTT
TCACTTGGAACCGCAGCTACGGGCGCTATTTTAAATTTACGTGGTGTCGGCGGTATTAAGATCAGCGATGTACTAGCTGT
ATCTGAAACCTAA

Upstream 100 bases:

>100_bases
TCTTATCAAATGAATGTTCAAGTCACTGAAGCCGCTAAATCTATGCTTCAGCAGACACTTAGAATAGGCAAATAAACTCA
GTGAAAGCTGGAGGTAAATT

Downstream 100 bases:

>100_bases
ACTAGAACTCATTTTGCGAGATATTTGCGCTCAATATGAGCAGCAAACGTCTTGAAATAGAATTAAACAAGGATTGAGGT
GAATCATGTCATTTAACATT

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEENPIPEPNSQELTQEDFFSLL
SQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGI
ISTPEPIESVIVRIEDEKGQLITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSV
SLGTAATGAILNLRGVGGIKISDVLAVSET

Sequences:

>Translated_270_residues
MSLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEENPIPEPNSQELTQEDFFSLL
SQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGI
ISTPEPIESVIVRIEDEKGQLITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSV
SLGTAATGAILNLRGVGGIKISDVLAVSET
>Mature_269_residues
SLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEENPIPEPNSQELTQEDFFSLLS
QQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGII
STPEPIESVIVRIEDEKGQLITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSVS
LGTAATGAILNLRGVGGIKISDVLAVSET

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=161, Percent_Identity=34.1614906832298, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 28221; Mature: 28090

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEE
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
NPIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIIN
CCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
LNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGIISTPEPIESVIVRIEDEKGQ
EHHCCCCCHHHHHCCCCCCEEEECCCCCEEECCCCCCCCEECCCHHHHEEEEEEECCCCC
LITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSV
EEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHEEEE
SLGTAATGAILNLRGVGGIKISDVLAVSET
ECCCCCCCEEEEECCCCCEEEEEEEEECCC
>Mature Secondary Structure 
SLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
NPIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIIN
CCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
LNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGIISTPEPIESVIVRIEDEKGQ
EHHCCCCCHHHHHCCCCCCEEEECCCCCEEECCCCCCCCEECCCHHHHEEEEEEECCCCC
LITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSV
EEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHEEEE
SLGTAATGAILNLRGVGGIKISDVLAVSET
ECCCCCCCEEEEECCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]