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The map label for this gene is cydA [H]

Identifier: 157961146

GI number: 157961146

Start: 1610325

End: 1611881

Strand: Direct

Name: cydA [H]

Synonym: Spea_1318

Alternate gene names: 157961146

Gene position: 1610325-1611881 (Clockwise)

Preceding gene: 157961145

Following gene: 157961147

Centisome position: 31.12

GC content: 45.41

Gene sequence:

>1557_bases
ATGATTTTAGAAGAGGTTGTTGAGCTGTCGCGTTTCCAGTTTGCGATGACGGCCATGTATCACTTCCTATTTGTTCCCTT
GACCTTGGGGTTAGCATTCTTGCTAGCCATTATGGAATCACTTTATGTGATGACCAATAAGCAAATCTATAAAGATATGA
CCAAGTTCTGGGGTAAGTTATTCGGTATCAACTTTGCACTTGGCGTTGCAACCGGTTTGGCCATGGAGTTCCAGTTCGGA
ACTAACTGGTCATACTATTCGCATTACGTCGGTGACATTTTTGGTGCACCACTTGCTATTGAAGGCCTGATGGCATTCTT
CCTAGAATCGACTCTAGTGGGTATGTTCTTCTTTGGTTGGGACCGTTTCAGCAAGCGTCAGCATTTAGCTGTAACTTGGT
TAGTTGCGCTAGGTTCTAACATGTCTGCATTATGGATCTTAGTGGCTAACGGCTGGATGCAAAACCCAGTAGGTAGCACA
TTCAACTACGAAACCATGCGAATGGAAATGACCAGCTGGGGTGAAGTGTTATTTAACCCCGTTGCACAGGTGAAGTTTGT
TCACACTGTGGCGTCAGGCTACGTAGCGGGTGCGATGTTCGTTCTAGCTATCAGTGCTTACTACATTCTGAAGAAGCGTG
ACCTACCGTTTGCACGTCGCTCATTTGCGATTGCAGCAAGTTTCGGTATGGCATCGATCTTGTCTGTAATCGTTCTTGGT
GACGAATCTGGCTACAAGGTGGGTGAAGTTCAGCGTGTTAAGTTAGCGGCAATTGAAGCTGAATGGCACACTGAGCCAGC
TCCAGCAGCATTTACTGCAGTTGGTTTCCCAAATCAAGAAACTCAAGAAACAGACTTCGCGGTTAAAATTCCTTATGCAA
TGGGTATCATTGCGACTCGTTCACTTGATGAGCAAGTAACAGGTATTAAGGATCTGATTGCTGAGCACGAAGTGCGTATT
CGTAATGGTATGGTGGCATACGGTCTACTTGAGCAATTACGTAACGGTAATGAAACTCCAGAGATCCGCGCGGCATTTGA
AGAAGCAAAAGTTGACCTAGGTTACGGTCTACTACTGAAGCGTTATACCGATAAAGTGGTTGATGCGACAGATGAGCAGA
TTAAAGCTGCAGCTGATGATTCTATTCCAAACGTAGCACCTATGTTCTGGTCTTTCCGCGTCATGGTTGGTGCGGGTATG
GTGATGTTATTCGTGTTTGCTGCAGCATTCTGGCAGAGCACGCGTCATCAAATCGAAGAGAAACCATGGGTTCTAAAAGC
GGCACTTTACAGCTTACCACTACCGTGGATTGCAATTGAGTGTGGTTGGTTTGTGGCTGAATACGGTCGTCAACCTTGGA
CGATTTCTGAAGTGTTACCGACATTCATGTCAGCCTCTAGCTTGTCAGTGGGCGACCTAATGTTCAGTATCGTTTCTATC
ATGCTGTTCTATACCATCTTGCTAGTGATTGAACTGTTCTTAATGATTAAGTTCGCACGTATTGGCCCAAGCTGTTTGAA
GACGGGTCGCTATCACTTTGAAAAGCTTGATGCCTAA

Upstream 100 bases:

>100_bases
TCGGCTGAGTTTACTGCATTACTATTCCTATATAGGCAATCACAATTCGTTGATGGGGATCTAACGATTGTGATTTGACA
CACCACCTAAGGAGTCACAA

Downstream 100 bases:

>100_bases
ACTGGAGATCTGATTATGTTTGATTATGAAATGTTAAGATTCATCTGGTGGGCACTGATTGGTGTGCTTTTCATCGGATT
CGCTGTTACCGACGGCTTCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MILEEVVELSRFQFAMTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFSKRQHLAVTWLVALGSNMSALWILVANGWMQNPVGST
FNYETMRMEMTSWGEVLFNPVAQVKFVHTVASGYVAGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEVQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETQETDFAVKIPYAMGIIATRSLDEQVTGIKDLIAEHEVRI
RNGMVAYGLLEQLRNGNETPEIRAAFEEAKVDLGYGLLLKRYTDKVVDATDEQIKAAADDSIPNVAPMFWSFRVMVGAGM
VMLFVFAAAFWQSTRHQIEEKPWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLSVGDLMFSIVSI
MLFYTILLVIELFLMIKFARIGPSCLKTGRYHFEKLDA

Sequences:

>Translated_518_residues
MILEEVVELSRFQFAMTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFSKRQHLAVTWLVALGSNMSALWILVANGWMQNPVGST
FNYETMRMEMTSWGEVLFNPVAQVKFVHTVASGYVAGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEVQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETQETDFAVKIPYAMGIIATRSLDEQVTGIKDLIAEHEVRI
RNGMVAYGLLEQLRNGNETPEIRAAFEEAKVDLGYGLLLKRYTDKVVDATDEQIKAAADDSIPNVAPMFWSFRVMVGAGM
VMLFVFAAAFWQSTRHQIEEKPWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLSVGDLMFSIVSI
MLFYTILLVIELFLMIKFARIGPSCLKTGRYHFEKLDA
>Mature_518_residues
MILEEVVELSRFQFAMTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFSKRQHLAVTWLVALGSNMSALWILVANGWMQNPVGST
FNYETMRMEMTSWGEVLFNPVAQVKFVHTVASGYVAGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEVQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETQETDFAVKIPYAMGIIATRSLDEQVTGIKDLIAEHEVRI
RNGMVAYGLLEQLRNGNETPEIRAAFEEAKVDLGYGLLLKRYTDKVVDATDEQIKAAADDSIPNVAPMFWSFRVMVGAGM
VMLFVFAAAFWQSTRHQIEEKPWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLSVGDLMFSIVSI
MLFYTILLVIELFLMIKFARIGPSCLKTGRYHFEKLDA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=511, Percent_Identity=72.0156555772994, Blast_Score=785, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=59.7222222222222, Blast_Score=632, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58187; Mature: 58187

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILEEVVELSRFQFAMTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVATGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGW
HCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFSKRQHLAVTWLVALGSNMSALWILVANGWMQNPVGSTFNYETMRMEMTSWGEVLFNP
HHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHEEEEHHHHHHHHHHH
VAQVKFVHTVASGYVAGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEVQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETQETDFAVKIPYAMGIIATR
CCCCCCCCCCCEEEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCCEEECCHHHHHHHHC
SLDEQVTGIKDLIAEHEVRIRNGMVAYGLLEQLRNGNETPEIRAAFEEAKVDLGYGLLLK
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
RYTDKVVDATDEQIKAAADDSIPNVAPMFWSFRVMVGAGMVMLFVFAAAFWQSTRHQIEE
HHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KPWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLSVGDLMFSIVSI
CCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
MLFYTILLVIELFLMIKFARIGPSCLKTGRYHFEKLDA
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCC
>Mature Secondary Structure
MILEEVVELSRFQFAMTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVATGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGW
HCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFSKRQHLAVTWLVALGSNMSALWILVANGWMQNPVGSTFNYETMRMEMTSWGEVLFNP
HHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHEEEEHHHHHHHHHHH
VAQVKFVHTVASGYVAGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEVQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETQETDFAVKIPYAMGIIATR
CCCCCCCCCCCEEEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCCEEECCHHHHHHHHC
SLDEQVTGIKDLIAEHEVRIRNGMVAYGLLEQLRNGNETPEIRAAFEEAKVDLGYGLLLK
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
RYTDKVVDATDEQIKAAADDSIPNVAPMFWSFRVMVGAGMVMLFVFAAAFWQSTRHQIEE
HHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KPWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLSVGDLMFSIVSI
CCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
MLFYTILLVIELFLMIKFARIGPSCLKTGRYHFEKLDA
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]