Click here to switch to the map view.

The map label for this gene is 157960834

Identifier: 157960834

GI number: 157960834

Start: 1222292

End: 1223509

Strand: Reverse

Name: 157960834

Synonym: Spea_1006

Alternate gene names: NA

Gene position: 1223509-1222292 (Counterclockwise)

Preceding gene: 157960835

Following gene: 157960833

Centisome position: 23.64

GC content: 46.88

Gene sequence:

>1218_bases
ATGACCACTTGGCTAACTATAGGGATACTATTTACTTTCGCCGCCATTGCCTTTGTGATCTATCGCTGGGGTAACGTCAA
ATGTATCGGTGTCACACCGGTACGCACCTTTACCTTTATCGCCATCCTGTTTACCTCGGGACTCGATGTGGGCCTAATAA
TGTTCCCGCTCACCGAGTTCGCAGGTTATGCAGACTTAAGCACAAGCCCTGAGTATGGCTTTACTAATCCCTTAGCGATT
GAGTTTGGCTTCTGGGCATTTTTAATCTGGGCTTTTTACTTCTTAACCTGTTTCTATTTCTGTGTGATCGAGCCGAGAGT
GAAGTTCTTCGAGATCCCAGTGATCAAGTTCATTAATAACTTAGTGATTATTGGCACCTGTGCCTTTACCGCTTACCTGC
TTTTGACCAACCTGCCTTGGTACCTGCCAGAGATGGGCGATGGCGAGTCGATTGTGAGTAGCTTCTATCTAATTGTATTT
GTGATTATCGCCGCCGCAGTTTATTCCAGTACCAGTATTCGCTACGTGCGTATTCTCAGCTTAGCCAGCACTTGGTTGTT
CTTAGGGCTCATCGTACTCATGTGGGCTGGCGCGTTTATGTCAAAAGAGTCGGGTGTAGGCGAATTTGTTAACACCTTCG
CCTTGATTGGCGACTACTTTGGCAATATTCACCACTTCGTGCTGCCGATGAACGATTACCACGAGTTCTACCTATTCTGG
TGGTTTGCTTGGAGCATCATGATTGGTCAGTTCACATCCCGCTTTGTCGGCGGCTTAAAGACCTACCAAGTACTGATTGC
CATGATGGTGTTCCCATCGTTGCCAATCGCCGTGTGGTTTACTGTGCTCTACTACTACAGCGCCAATGAGATCGCCACCA
CAGGTTTCTACAATCTTGCCATGGTGATGGTAGGCGTTACCTTCGTGGTCAACTCGCTCGACTCGTTAATTCGTCTGTAC
ACCGACAACCTTAACCTGACTGTTGAGCGTTTCGGTAAGACCAAATACATCATAGGCAATCTCGTCTTGATGAGCGGTCT
CACCCTGTTGTTCCAACTTAACTTCCTTGAGATCCAGTGGGTTGGCGCGCTCGCTATCGGCCTTATCTTAGGCTGCTTTG
GTTACATTTTAGCGACTAAATACAACAAGGTGGCTGCCATCGAGCGTTCACCAACTGAAAACAAAATCGACTTTAGCAAA
ATTGAATTAGCTAACTAA

Upstream 100 bases:

>100_bases
TGAGGGATTTTTGCGGCCAAAATTTGGCTAAAAGCGGGCATAACGATAATAAAAACAAGGATCAAACCATGTTAAATAAG
CAAAAGTCAGGAGTTCAATA

Downstream 100 bases:

>100_bases
TAAGAAAGAAAGGGAAATGATGAAAACAACAATTAAAAATCTTGCGCTACTGGGTCTAATCGCATTGCCAACAACGGCAA
TGGCTAACGTGAGCTCAACG

Product: putative BCCT family protein transporter

Products: NA

Alternate protein names: QuateRNAry Ammonium Permease; BCCT Family Transporter; Choline-Glycine Betaine Transporter-Like Protein

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTTWLTIGILFTFAAIAFVIYRWGNVKCIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEFAGYADLSTSPEYGFTNPLAI
EFGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPVIKFINNLVIIGTCAFTAYLLLTNLPWYLPEMGDGESIVSSFYLIVF
VIIAAAVYSSTSIRYVRILSLASTWLFLGLIVLMWAGAFMSKESGVGEFVNTFALIGDYFGNIHHFVLPMNDYHEFYLFW
WFAWSIMIGQFTSRFVGGLKTYQVLIAMMVFPSLPIAVWFTVLYYYSANEIATTGFYNLAMVMVGVTFVVNSLDSLIRLY
TDNLNLTVERFGKTKYIIGNLVLMSGLTLLFQLNFLEIQWVGALAIGLILGCFGYILATKYNKVAAIERSPTENKIDFSK
IELAN

Sequences:

>Translated_405_residues
MTTWLTIGILFTFAAIAFVIYRWGNVKCIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEFAGYADLSTSPEYGFTNPLAI
EFGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPVIKFINNLVIIGTCAFTAYLLLTNLPWYLPEMGDGESIVSSFYLIVF
VIIAAAVYSSTSIRYVRILSLASTWLFLGLIVLMWAGAFMSKESGVGEFVNTFALIGDYFGNIHHFVLPMNDYHEFYLFW
WFAWSIMIGQFTSRFVGGLKTYQVLIAMMVFPSLPIAVWFTVLYYYSANEIATTGFYNLAMVMVGVTFVVNSLDSLIRLY
TDNLNLTVERFGKTKYIIGNLVLMSGLTLLFQLNFLEIQWVGALAIGLILGCFGYILATKYNKVAAIERSPTENKIDFSK
IELAN
>Mature_404_residues
TTWLTIGILFTFAAIAFVIYRWGNVKCIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEFAGYADLSTSPEYGFTNPLAIE
FGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPVIKFINNLVIIGTCAFTAYLLLTNLPWYLPEMGDGESIVSSFYLIVFV
IIAAAVYSSTSIRYVRILSLASTWLFLGLIVLMWAGAFMSKESGVGEFVNTFALIGDYFGNIHHFVLPMNDYHEFYLFWW
FAWSIMIGQFTSRFVGGLKTYQVLIAMMVFPSLPIAVWFTVLYYYSANEIATTGFYNLAMVMVGVTFVVNSLDSLIRLYT
DNLNLTVERFGKTKYIIGNLVLMSGLTLLFQLNFLEIQWVGALAIGLILGCFGYILATKYNKVAAIERSPTENKIDFSKI
ELAN

Specific function: Unknown

COG id: COG1292

COG function: function code M; Choline-glycine betaine transporter

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45926; Mature: 45795

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTWLTIGILFTFAAIAFVIYRWGNVKCIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEF
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AGYADLSTSPEYGFTNPLAIEFGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPVIKFINN
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECHHHHHHCC
LVIIGTCAFTAYLLLTNLPWYLPEMGDGESIVSSFYLIVFVIIAAAVYSSTSIRYVRILS
EEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LASTWLFLGLIVLMWAGAFMSKESGVGEFVNTFALIGDYFGNIHHFVLPMNDYHEFYLFW
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
WFAWSIMIGQFTSRFVGGLKTYQVLIAMMVFPSLPIAVWFTVLYYYSANEIATTGFYNLA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
MVMVGVTFVVNSLDSLIRLYTDNLNLTVERFGKTKYIIGNLVLMSGLTLLFQLNFLEIQW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHEECHHEEEH
VGALAIGLILGCFGYILATKYNKVAAIERSPTENKIDFSKIELAN
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECC
>Mature Secondary Structure 
TTWLTIGILFTFAAIAFVIYRWGNVKCIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEF
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AGYADLSTSPEYGFTNPLAIEFGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPVIKFINN
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECHHHHHHCC
LVIIGTCAFTAYLLLTNLPWYLPEMGDGESIVSSFYLIVFVIIAAAVYSSTSIRYVRILS
EEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LASTWLFLGLIVLMWAGAFMSKESGVGEFVNTFALIGDYFGNIHHFVLPMNDYHEFYLFW
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
WFAWSIMIGQFTSRFVGGLKTYQVLIAMMVFPSLPIAVWFTVLYYYSANEIATTGFYNLA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
MVMVGVTFVVNSLDSLIRLYTDNLNLTVERFGKTKYIIGNLVLMSGLTLLFQLNFLEIQW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHEECHHEEEH
VGALAIGLILGCFGYILATKYNKVAAIERSPTENKIDFSKIELAN
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA