Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 157960822

GI number: 157960822

Start: 1211799

End: 1213211

Strand: Reverse

Name: yebA [H]

Synonym: Spea_0994

Alternate gene names: 157960822

Gene position: 1213211-1211799 (Counterclockwise)

Preceding gene: 157960824

Following gene: 157960821

Centisome position: 23.45

GC content: 45.44

Gene sequence:

>1413_bases
ATGGGAAAGGTTATAACTTTATTTAAATTACTGCCAAAATTACATCAAATGCTCTTGTGCGGGTTAGTTTTTGTCACGTT
AATTATTATCTTAATACCGTCAGATGACGTGCAAGCATCCAAACAAACTCCGTCTGCCAGCGGTGAATATGACGTTAACA
CGCGTTATAGCGTACCGTTAGCTTTTAGAACTCCCACTGCGCCTGCTGCATCATTAAGCGAAACGGATCCTGAGCTGCGT
AAACGCCCTGCACAACTTGCACCAGCATCAAGCAAAACCGCTGAACAGGCTCAACAAGAAATAAAGCCTGAGCCGACTGT
TGCAGCCCAAAAACTCAACGAAAAACGTTTCCAAGTTAAAAGTGGCGACACCTTAGCGGCGCTATTTGAACGCGCCGGTC
TTAGCGCGAAAGATGTTTATGATGTGACCCAGCTGCCTAAGGCGAAAAAGAATCTATTAAAAATCATGCCGGGTGATAAC
TTAGTTATCGCCAAGAGTGAAGATGGCAAACTGGTTCAGCTTAGATACCATCTCGATAAAATCACCACCTTAATCGTCGA
TAACGACTCCAGTGGTTATACAGAGCATATCGTCACTAAAAAGGTCGAGGCTCGCAGTAAGTTTGCTAGCGCCACCATAG
AAAACAACTTCTGGAACGCCGGCGTCAATGCCGGGCTTACCCCAAATCAAATTATGCAGCTGGCTACCATTTTCGGCTGG
GATATCGACTTTGCCTTAGATCTACGTAAAGGCGATCAATTTGCAATGATATTTGAAGAAGAGTATGCCGATGGCGAATT
CTTAAAGAACGGCAACATCTTAGCCGCTGAATTTACCAATCAGGGGGACCGCTACACGGCAGTTCGCTATAAAGATGGTA
ACTACTATTCTGAAGAGGGCCGTAGCATGCGCAAAGCCTTCTTACGCTCTCCGGTCGACTTTAAATATGTCAGCTCAAGC
TTTAACCCTCGTAGACTCCACCCTGTTACAGGTCAAGTAAGAGCCCATCGTGGGGTTGACTATGTAGCAGCCGTAGGTAC
CCCAATTAAAGCAGCGGGTAATGGCCGAGTCATCAAGTCGAGCTATAACCAATATAATGGTAACTATGTGTTTATTAAGC
ACAACGATACCTATACCACCAAGTACCTACACTTGACTAAACGCAAAGTAAAGACCGGACAATCGGTTAAACAGGGACAG
ATTATCGGTACCCTAGGCTCAACAGGTCGAGTAACCGGGCCACACCTACACTATGAATTCATCGTCAATGGCGTGCACCG
TAATCCTCGCACTATCAAACTGCCAAAGTCTGAGCCTATTGCGAGCAAAGAAAAAGCTCAGTTTGCTAAGCTTAGTGAAA
CTATGATGGCTGAGCTTGAACATAACAAACAGGTGCAAATCGCAGCCCAGTAG

Upstream 100 bases:

>100_bases
CAAAAAAATATGGGCACTCATGTTACTTGTTAGCAAGCACAAATGAAAGTGTGTACACTAAAGGGATCACTAAGAAAGGG
CTAATTTGGTATCAAGGTCA

Downstream 100 bases:

>100_bases
CGCTGCAAAACCTCTGTTTTACTCGGTGCGATTTATAGACTCTTTATAGGTTTAATGCCATGAATAATAATTATTATGTA
GGCTTGATGTCCGGCACTAG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MGKVITLFKLLPKLHQMLLCGLVFVTLIIILIPSDDVQASKQTPSASGEYDVNTRYSVPLAFRTPTAPAASLSETDPELR
KRPAQLAPASSKTAEQAQQEIKPEPTVAAQKLNEKRFQVKSGDTLAALFERAGLSAKDVYDVTQLPKAKKNLLKIMPGDN
LVIAKSEDGKLVQLRYHLDKITTLIVDNDSSGYTEHIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATIFGW
DIDFALDLRKGDQFAMIFEEEYADGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKYVSSS
FNPRRLHPVTGQVRAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQ
IIGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIASKEKAQFAKLSETMMAELEHNKQVQIAAQ

Sequences:

>Translated_470_residues
MGKVITLFKLLPKLHQMLLCGLVFVTLIIILIPSDDVQASKQTPSASGEYDVNTRYSVPLAFRTPTAPAASLSETDPELR
KRPAQLAPASSKTAEQAQQEIKPEPTVAAQKLNEKRFQVKSGDTLAALFERAGLSAKDVYDVTQLPKAKKNLLKIMPGDN
LVIAKSEDGKLVQLRYHLDKITTLIVDNDSSGYTEHIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATIFGW
DIDFALDLRKGDQFAMIFEEEYADGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKYVSSS
FNPRRLHPVTGQVRAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQ
IIGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIASKEKAQFAKLSETMMAELEHNKQVQIAAQ
>Mature_469_residues
GKVITLFKLLPKLHQMLLCGLVFVTLIIILIPSDDVQASKQTPSASGEYDVNTRYSVPLAFRTPTAPAASLSETDPELRK
RPAQLAPASSKTAEQAQQEIKPEPTVAAQKLNEKRFQVKSGDTLAALFERAGLSAKDVYDVTQLPKAKKNLLKIMPGDNL
VIAKSEDGKLVQLRYHLDKITTLIVDNDSSGYTEHIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATIFGWD
IDFALDLRKGDQFAMIFEEEYADGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKYVSSSF
NPRRLHPVTGQVRAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQI
IGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIASKEKAQFAKLSETMMAELEHNKQVQIAAQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=470, Percent_Identity=30.8510638297872, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40.9523809523809, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 52270; Mature: 52139

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVITLFKLLPKLHQMLLCGLVFVTLIIILIPSDDVQASKQTPSASGEYDVNTRYSVPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
AFRTPTAPAASLSETDPELRKRPAQLAPASSKTAEQAQQEIKPEPTVAAQKLNEKRFQVK
EEECCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHEEEC
SGDTLAALFERAGLSAKDVYDVTQLPKAKKNLLKIMPGDNLVIAKSEDGKLVQLRYHLDK
CCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHEEECCCCCEEEEECCCCCEEEEEEEECE
ITTLIVDNDSSGYTEHIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATIFGW
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHCC
DIDFALDLRKGDQFAMIFEEEYADGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEG
CEEEEEEECCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEEHHHH
RSMRKAFLRSPVDFKYVSSSFNPRRLHPVTGQVRAHRGVDYVAAVGTPIKAAGNGRVIKS
HHHHHHHHCCCCCEEECCCCCCCCEECCCCCCHHHCCCCCEEEECCCCEEECCCCCEEEC
SYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQIIGTLGSTGRVTGPHLHYEF
CCCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEE
IVNGVHRNPRTIKLPKSEPIASKEKAQFAKLSETMMAELEHNKQVQIAAQ
EEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure 
GKVITLFKLLPKLHQMLLCGLVFVTLIIILIPSDDVQASKQTPSASGEYDVNTRYSVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
AFRTPTAPAASLSETDPELRKRPAQLAPASSKTAEQAQQEIKPEPTVAAQKLNEKRFQVK
EEECCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHEEEC
SGDTLAALFERAGLSAKDVYDVTQLPKAKKNLLKIMPGDNLVIAKSEDGKLVQLRYHLDK
CCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHEEECCCCCEEEEECCCCCEEEEEEEECE
ITTLIVDNDSSGYTEHIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATIFGW
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHCC
DIDFALDLRKGDQFAMIFEEEYADGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEG
CEEEEEEECCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEEHHHH
RSMRKAFLRSPVDFKYVSSSFNPRRLHPVTGQVRAHRGVDYVAAVGTPIKAAGNGRVIKS
HHHHHHHHCCCCCEEECCCCCCCCEECCCCCCHHHCCCCCEEEECCCCEEECCCCCEEEC
SYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQIIGTLGSTGRVTGPHLHYEF
CCCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEE
IVNGVHRNPRTIKLPKSEPIASKEKAQFAKLSETMMAELEHNKQVQIAAQ
EEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]