Definition Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession NC_009901
Length 5,174,581

Click here to switch to the map view.

The map label for this gene is yedI [H]

Identifier: 157960645

GI number: 157960645

Start: 1014119

End: 1015063

Strand: Direct

Name: yedI [H]

Synonym: Spea_0817

Alternate gene names: 157960645

Gene position: 1014119-1015063 (Clockwise)

Preceding gene: 157960643

Following gene: 157960646

Centisome position: 19.6

GC content: 48.47

Gene sequence:

>945_bases
ATGGCAGGGGCAAGCTTATTAACCTTGTTAGATGATATCGCGACGATTTTAGATGATGTCGCCGCAATGAGTAAAATTGC
CGCCCGTAAAACGGCGGGTGTGTTGGGCGATGATTTAGCCTTAAACGCTCAGCAGGTGTCGGGCGTTAGCGCCGATAGAG
AGCTGCCTGTGGTGTGGGCGGTTGCAGTAGGTTCATTTAAGAATAAGTGCATCTTAGTGCCTGCGGCTATGTTAATCAGT
GCCTTTATTCCTTGGGCGGTGACACCGCTACTGATGTTTGGTGGCCTGTACCTTTGCTATGAAGGTTTCGAAAAAATTTA
CCACAGTTATTCTGCCAACAAGCACCACCAAATCGATGAGTCTCAGGCAAGCCCAGAGGAGATTGTCGATCTAAAGCTAT
ACGAGGCCAATAAGGTTAAAGGCGCGATACGGACCGACTTTGTGTTGTCAGCGGAGATCATCGCCATTACCTTAGGCATT
GTGGCCGATAAGAGCTTGAGTACTCAATTTTTCACCCTAAGTGTTATCGCTATCGTGATGACCATAGGTGTGTATGGTTT
GGTGGCTGGTATAGTCAAAATTGATGATGCAGGTCTGTATCTGAGTCAGCGTCCCGGTGAAACTCTGTGGGCGAGATTTA
AGCGTCGTTTTGGTCTGATGCTGCTTAACTCGGCGCCTTATCTAATGAAGACTTTATCTGTGGTGGGCACCATAGCCATG
TTTATGGTGGGCGGCGGCATTTTAACTCATGGCTGGCACTGGATGGGGGCGCAGATAACGTTGGCGGCGCAGTGGATTGA
AGCATTCGAGTTTGTCGGACCTGTGGTCGCCTTTATCACTCCAAGTATTTTAAACGCAATTTTTGGCGTCATAGCCGGTG
CTGTAGCGGTATTGCTGATGGAGCTGTTTATTAAGCTAAAGGGCGATAAAGGCTCTGCCGAATAG

Upstream 100 bases:

>100_bases
ACAATAACCGCTATAGTGTGAGTATTATTGATGTAAATCGCTAGATTAAGTATGAGATGGATTTTCGGCGTGAGCGCCAT
TAAGTGATAAAGGAGTCGAT

Downstream 100 bases:

>100_bases
CTTTAGTGTTAAAACTTAATTGTTAGCTTAGATATCCATATGGAAAGGTCGTAATGGCGAATACAAGTACCAAAACAAAC
AGGGTCAAACTAGCAAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAGASLLTLLDDIATILDDVAAMSKIAARKTAGVLGDDLALNAQQVSGVSADRELPVVWAVAVGSFKNKCILVPAAMLIS
AFIPWAVTPLLMFGGLYLCYEGFEKIYHSYSANKHHQIDESQASPEEIVDLKLYEANKVKGAIRTDFVLSAEIIAITLGI
VADKSLSTQFFTLSVIAIVMTIGVYGLVAGIVKIDDAGLYLSQRPGETLWARFKRRFGLMLLNSAPYLMKTLSVVGTIAM
FMVGGGILTHGWHWMGAQITLAAQWIEAFEFVGPVVAFITPSILNAIFGVIAGAVAVLLMELFIKLKGDKGSAE

Sequences:

>Translated_314_residues
MAGASLLTLLDDIATILDDVAAMSKIAARKTAGVLGDDLALNAQQVSGVSADRELPVVWAVAVGSFKNKCILVPAAMLIS
AFIPWAVTPLLMFGGLYLCYEGFEKIYHSYSANKHHQIDESQASPEEIVDLKLYEANKVKGAIRTDFVLSAEIIAITLGI
VADKSLSTQFFTLSVIAIVMTIGVYGLVAGIVKIDDAGLYLSQRPGETLWARFKRRFGLMLLNSAPYLMKTLSVVGTIAM
FMVGGGILTHGWHWMGAQITLAAQWIEAFEFVGPVVAFITPSILNAIFGVIAGAVAVLLMELFIKLKGDKGSAE
>Mature_313_residues
AGASLLTLLDDIATILDDVAAMSKIAARKTAGVLGDDLALNAQQVSGVSADRELPVVWAVAVGSFKNKCILVPAAMLISA
FIPWAVTPLLMFGGLYLCYEGFEKIYHSYSANKHHQIDESQASPEEIVDLKLYEANKVKGAIRTDFVLSAEIIAITLGIV
ADKSLSTQFFTLSVIAIVMTIGVYGLVAGIVKIDDAGLYLSQRPGETLWARFKRRFGLMLLNSAPYLMKTLSVVGTIAMF
MVGGGILTHGWHWMGAQITLAAQWIEAFEFVGPVVAFITPSILNAIFGVIAGAVAVLLMELFIKLKGDKGSAE

Specific function: Unknown

COG id: COG2354

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788268, Length=313, Percent_Identity=55.9105431309904, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008526 [H]

Pfam domain/function: PF05661 DUF808 [H]

EC number: NA

Molecular weight: Translated: 33687; Mature: 33556

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGASLLTLLDDIATILDDVAAMSKIAARKTAGVLGDDLALNAQQVSGVSADRELPVVWA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCEEEE
VAVGSFKNKCILVPAAMLISAFIPWAVTPLLMFGGLYLCYEGFEKIYHSYSANKHHQIDE
EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SQASPEEIVDLKLYEANKVKGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLSVIAIVM
CCCCHHHHHEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TIGVYGLVAGIVKIDDAGLYLSQRPGETLWARFKRRFGLMLLNSAPYLMKTLSVVGTIAM
HHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHH
FMVGGGILTHGWHWMGAQITLAAQWIEAFEFVGPVVAFITPSILNAIFGVIAGAVAVLLM
HHHCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFIKLKGDKGSAE
HHHHHHCCCCCCCC
>Mature Secondary Structure 
AGASLLTLLDDIATILDDVAAMSKIAARKTAGVLGDDLALNAQQVSGVSADRELPVVWA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCEEEE
VAVGSFKNKCILVPAAMLISAFIPWAVTPLLMFGGLYLCYEGFEKIYHSYSANKHHQIDE
EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SQASPEEIVDLKLYEANKVKGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLSVIAIVM
CCCCHHHHHEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TIGVYGLVAGIVKIDDAGLYLSQRPGETLWARFKRRFGLMLLNSAPYLMKTLSVVGTIAM
HHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHH
FMVGGGILTHGWHWMGAQITLAAQWIEAFEFVGPVVAFITPSILNAIFGVIAGAVAVLLM
HHHCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFIKLKGDKGSAE
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 2527357; 7567469 [H]