| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is mpl [H]
Identifier: 157960514
GI number: 157960514
Start: 847864
End: 849249
Strand: Direct
Name: mpl [H]
Synonym: Spea_0686
Alternate gene names: 157960514
Gene position: 847864-849249 (Clockwise)
Preceding gene: 157960508
Following gene: 157960515
Centisome position: 16.39
GC content: 48.41
Gene sequence:
>1386_bases ATGCACGTACATATTTTAGGAATTTGTGGCACTTTCATGGGTGGCTTAGCCTTATTAGCTAGAGCAGAAGGGCACAAGGT CACAGGCAGCGATGCCAATGTTTATCCTCCGATGAGCACGCAACTCGAAGAGCAAGGGATTGAGCTTATTCAGGGCTTCG ATCCATCACAACTCGGAAGCAGTGAGGATGATGCGCCAGATCTTGTGGTAATTGGCAATGCCATGAGCCGTGGCAATCCT TGTGTCGAGGCGGTATTGAACCGCGGCCTTAAATACACCTCTGGGCCACAGTTTCTTGCCGAGCATATCTTGCCTCAGCG CTGGGTATTGGCAGTAGCGGGCACCCACGGCAAGACATCGACATCGAGTATGTTGGCGTGGATCTTAGAAGATTGCGGCT ATGAGCCAGGCTTTTTGATTGGCGGCGTGCCACAAAACTTCGGTGTGTCTGCTCGCTTAGGTGGCTCGCCTTTCTTTGTA GTGGAAGCCGACGAGTATGACAGCGCGTTTTTCGATAAGCGTTCTAAGTTTGTGCACTACCAGCCACGCACCTTAGTGAT TAATAACTTAGAGTTTGATCATGCGGATATTTTTGATGATTTAAAGGCGATTCAGCGTCAGTTTAACCATGTCATACGTA CCGTGCCGGGTGAGGGTAAGATTATCTGGCCTGCGGATGCTAATAGTGTGCAACAAGTTATCGATATGGGCTGCTGGAGT GAGCAAGAGCAGTATCACTTGAGTGGCAACTCACAGGGCTGGTATGCGGTTAACTTGACTGAAGACGGTCATAAATTTGA GGTGTTCTTCGATGGTGAGTCGCAAGGCATTTTGGACTGGCAGTTAATCGGTCAGCACAATATTGAAAATGCGGTGATGG CTATTGCTGCAGCAAGGCATGTGGGGGTTAAACCAGAGGCGGCAATTGCCGCCTTAACCCAGTTTGCACCACCAAAGCGC AGAATGGAGCTACTAGATACAGTCAATGGTATCGAAGTCTATGATGACTTTGCTCATCACCCGACAGCCATTACCACTTC GCTCAATGGCATGCGAGCCCGTGTTGGGAGCGGCAAGATCACTGTGATTTTAGAGCCGCGCTCTAACACCATGAAGAGCG GAGTACATAAAGATACTCTAGCTAACTCACTGAGCTTGGCGAGCAATGCATACTTGTATCAAGCGGGTAATATCGATTGG GATATTAGCGCTGCGATGAGCTGCGCCTCGATCCCGGTTGAGGTCTTATATGATATTGATGAGATTGTTGAGCGGGTATC TGCCCAAGCTAATAGCACAGATACTATTATTGTTATGAGTAATGGTGGCTTTGGTGGGTTACATCAAAAGCTGCTTGCTA AGCTTCGTCATCAAACAGGTAAATAA
Upstream 100 bases:
>100_bases CCGATACAGACAGGAGCAATTTTAAACTTATAGTTAACTGACAAAACTCGTTGCAATTGGTTAGAATGAGGCAGATTTTT CATTCTTCAGAGTGGCAGGC
Downstream 100 bases:
>100_bases ATAGCCATGAGTGGGACATATCGTAAAGCAGACAAATCGATTAGTTTAGCCTGGACCGGCGCATCAGGCGCTCCCTATGG CTTAAGGCTGCTTGAAATTT
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MHVHILGICGTFMGGLALLARAEGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGSSEDDAPDLVVIGNAMSRGNP CVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFV VEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWS EQEQYHLSGNSQGWYAVNLTEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKR RMELLDTVNGIEVYDDFAHHPTAITTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDW DISAAMSCASIPVEVLYDIDEIVERVSAQANSTDTIIVMSNGGFGGLHQKLLAKLRHQTGK
Sequences:
>Translated_461_residues MHVHILGICGTFMGGLALLARAEGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGSSEDDAPDLVVIGNAMSRGNP CVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFV VEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWS EQEQYHLSGNSQGWYAVNLTEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKR RMELLDTVNGIEVYDDFAHHPTAITTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDW DISAAMSCASIPVEVLYDIDEIVERVSAQANSTDTIIVMSNGGFGGLHQKLLAKLRHQTGK >Mature_461_residues MHVHILGICGTFMGGLALLARAEGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGSSEDDAPDLVVIGNAMSRGNP CVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFV VEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWS EQEQYHLSGNSQGWYAVNLTEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKR RMELLDTVNGIEVYDDFAHHPTAITTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDW DISAAMSCASIPVEVLYDIDEIVERVSAQANSTDTIIVMSNGGFGGLHQKLLAKLRHQTGK
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=456, Percent_Identity=60.7456140350877, Blast_Score=570, Evalue=1e-164, Organism=Escherichia coli, GI1786279, Length=461, Percent_Identity=26.0303687635575, Blast_Score=113, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 50220; Mature: 50220
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVHILGICGTFMGGLALLARAEGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGS CEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCC SEDDAPDLVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTS CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC TSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEADEYDSAFFDKRSKFVHY HHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCEEEEEECCCCCHHHHHCCCCEEEE QPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWS CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCC EQEQYHLSGNSQGWYAVNLTEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAARH CCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHH VGVKPEAAIAALTQFAPPKRRMELLDTVNGIEVYDDFAHHPTAITTSLNGMRARVGSGKI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCCEEECCCCEE TVILEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDWDISAAMSCASIPVEVLYDID EEEECCCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHCCCHHHHHHHH EIVERVSAQANSTDTIIVMSNGGFGGLHQKLLAKLRHQTGK HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MHVHILGICGTFMGGLALLARAEGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGS CEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCC SEDDAPDLVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTS CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC TSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEADEYDSAFFDKRSKFVHY HHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCEEEEEECCCCCHHHHHCCCCEEEE QPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWS CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCC EQEQYHLSGNSQGWYAVNLTEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAARH CCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHH VGVKPEAAIAALTQFAPPKRRMELLDTVNGIEVYDDFAHHPTAITTSLNGMRARVGSGKI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCCEEECCCCEE TVILEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDWDISAAMSCASIPVEVLYDID EEEECCCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHCCCHHHHHHHH EIVERVSAQANSTDTIIVMSNGGFGGLHQKLLAKLRHQTGK HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]