| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is uvrA [H]
Identifier: 157960398
GI number: 157960398
Start: 697337
End: 700180
Strand: Reverse
Name: uvrA [H]
Synonym: Spea_0569
Alternate gene names: 157960398
Gene position: 700180-697337 (Counterclockwise)
Preceding gene: 157960401
Following gene: 157960397
Centisome position: 13.53
GC content: 48.03
Gene sequence:
>2844_bases ATGGAAAATATTGAAGTACGTGGTGCTCGTACCCACAATCTTAAAAACATCAACCTGACTATTCCTCGTGACAAACTTAT CGTGATCACCGGACTGTCGGGTTCAGGCAAATCTTCTCTTGCATTTGACACCCTGTACGCTGAAGGACAACGACGCTACG TCGAGTCATTGTCGGCCTATGCTCGTCAATTCTTGAGCTTGATGGAAAAGCCTGATGTTGACCATATTGAGGGATTAAGC CCGGCTATTTCCATCGAGCAAAAGTCTACATCTCATAACCCACGCTCAACTGTGGGTACCATTACCGAAATCTACGATTA TTTAAGACTGTTGTTTGCCCGTGTGGGCGAGCCTCGCTGCCCCACTCACGGTGAGCCTTTAGCTGCACAAACCGTAAGTC AGATGGTCGATAAGGTGCTCGATCTGCCAGAAGACAGTCGTCAAATGTTACTAGCACCAGTGGTGAATAACCGTAAGGGT GAGCACGTTAAGCTGTTAGAAAGCTTATCCGCCCAAGGTTATATCCGCGCCAGAATCGATGGAGAAGTGTGCGACTTAAC CGACCCACCTGAGCTAGACCTTCACGTAAAACACACCATTGAAGTGGTTGTTGACCGCTTTAAAGTACGTGGTGATATTA AACAGCGTTTAGCAGAATCATTTGAAACCGCGCTCGAGTTGTCTGGCGGTATCGCTAAAATTGCCAGCATGGACCCAGCA GAAGGCAAAAGCAAAGTTGAAGAACAAGTGTTTTCGGCTAACTTTGCTTGCCCCGTATGTGGCTACTCGATGGCTGAGCT TGAGCCGCGTATTTTCTCCTTTAACAATCCAGCAGGAGCCTGCCAAACCTGTGATGGCCTTGGCGTGCAGCAATTTTTCG ATCCTGAACGCGTGATAACCAATACTGAACTTTCATTAGCAGGTGGCGCGATTCGTGGCTGGGATAGACGTAACTTCTAT TACTTCCAAATGCTGACCTCGCTTGCCGAACATTACAAGTTTGACATTGAGAAACCGTTTGAGCAGCTAAGCGATGATGT ACGTAAAATCGTACTCTATGGCTCTGGCAATCAGAGCATCGCGTTTAAGTATATCAACGACCGCGGCGATGTGGTCGTAA GAAATCATCCCTTCGAAGGGATCTTAAACAACATGGACAGACGCTACCGCGAAACCGAGTCTAATGCGGTTCGTGATGAA CTCACGAAGTTCATTAACACCCAGTCTTGTCAAAGCTGTGGTGGCTCTCGTCTACGTGAAGAAGCCCGTAACGTATTTAT TGAAGACTTAAACTTGCCAGTACTGACCCAATGGTCAATCGGTGAGGCTGCACAATACTTTGAGAAGCTTGAGCTAACGG GGCAACGTGCCCAGATAGCCGATAAGATCTTAAAAGAGGTGCGCGATCGTTTAGGCTTCCTCGTTAACGTTGGCTTAAAT TACTTAAGCCTTTCTCGCTCTGCCGACACCTTATCGGGCGGTGAAGCCCAGCGTATTCGACTTGCCAGCCAAATTGGCGC AGGTCTCGTGGGTGTGATGTATGTCCTCGATGAGCCGTCTATTGGTCTGCATCAGCGAGATAACGAGCGTTTACTGCAAA CCCTTATTCATCTGCGCGACTTAGGTAACACAGTTATCGTAGTCGAACACGATGAAGATGCCATTCGCATGGCGGATCAC GTTATCGACATCGGCCCTGGTGCAGGTGTTCACGGCGGTCAGGTCATAGGTGAAGGGACCTTGCAAGATCTTCTCGATTG CAAGGAGTCTATCACCGGTCAGTATCTGTCGGGCGAGAAGACAATTCACATCAAAACTGAGCGCACTCAATACGATGCAA ACAAGCTGATTGAGCTATTTGGTGCATCGGGCAATAACCTTAAAGATGTCGACTTGCAAATTCCTGTAGGCTTATTCACC TGTATTACCGGTGTGTCTGGCTCAGGTAAGTCGACACTGATCAACGACACCTTCTACAAGATTGCTCATATACAGTTAAA TGGTGCGACGGTTGATGAGCCTTCTCCTTACAAGAAAATTGTCGGCATGGATCATTGCGACAAAGTGGTCGATATAGATC AGAGCCCCATAGGCCGTACGCCGCGCTCTAACCCTGCCACTTATACAGGTATCTTCACTCCAATCCGTGAGCTGTTTGCT GCCACCCAAGAATCGCGAACTCGTGGCTATCAGCCTGGTCGTTTCTCGTTTAACGTTAAAGGCGGACGCTGTGAGGCTTG CCAAGGCGATGGTTTGATCAAGGTTGAGATGCACTTTCTACCCGATGTGTATGTGCCATGTGATAACTGTAAGGGACAGC GTTATAACCGTGAAACCTTGGATGTACGCTTTAAAGGCAAGAACATCCACGAAGTTCTGCAGATGACTGTTGAAGAAGCG AGACCTTTCTTCGATGCCATCCCTGCGATAGCCCGTAAACTTCAAACCTTGATGGATGTAGGCTTGTCGTATATTCGTCT AGGTCAAAGTGCGACTACCCTATCGGGTGGTGAAGCTCAGCGCGTTAAGCTTGCTAAGGAGTTGTCTAAGCGTGACACGG GTAAGACACTATATATTCTCGATGAACCAACGACGGGTCTGCACTTTGCTGATATCCAACTATTGCTGGACGTTTTACAT CGGCTTAAATCTCACGGCAATACTATCGTGGTGATCGAGCATAACCTAGATGTAATAAAAACGGCTGATTGGATCATCGA TCTTGGCCCAGAAGGTGGTTCTGGTGGCGGTACCATTTTAGTTGCGGGCACACCAGAAGAGGTCGCTGAGCATACCGAGT CTCATACCGCGCGCTTCTTAAAGCCGCTGTTAACTAAAGCATAA
Upstream 100 bases:
>100_bases TCAAGTTCCGCCTACAATTGATAGCCAGTTCTGTCTATTTCCGCAGGCAAATTTGTGAGATACTTAACCACTTTTTTCGG CTTTGAGATCTGAACGCTAG
Downstream 100 bases:
>100_bases AGCCTGTTAACCAAACAATGCACTTTAGAAACCTTTTCTTAAGCACTAGCCTAGTGATGACACTAGGCTTGTTGCTTATT GCCGTGATAGATCCCCTCAT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 947; Mature: 947
Protein sequence:
>947_residues MENIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGEPLAAQTVSQMVDKVLDLPEDSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVCDLTDPPELDLHVKHTIEVVVDRFKVRGDIKQRLAESFETALELSGGIAKIASMDPA EGKSKVEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLAEHYKFDIEKPFEQLSDDVRKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDE LTKFINTQSCQSCGGSRLREEARNVFIEDLNLPVLTQWSIGEAAQYFEKLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKTIHIKTERTQYDANKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHIQLNGATVDEPSPYKKIVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDNCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLTKA
Sequences:
>Translated_947_residues MENIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGEPLAAQTVSQMVDKVLDLPEDSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVCDLTDPPELDLHVKHTIEVVVDRFKVRGDIKQRLAESFETALELSGGIAKIASMDPA EGKSKVEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLAEHYKFDIEKPFEQLSDDVRKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDE LTKFINTQSCQSCGGSRLREEARNVFIEDLNLPVLTQWSIGEAAQYFEKLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKTIHIKTERTQYDANKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHIQLNGATVDEPSPYKKIVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDNCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLTKA >Mature_947_residues MENIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGEPLAAQTVSQMVDKVLDLPEDSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVCDLTDPPELDLHVKHTIEVVVDRFKVRGDIKQRLAESFETALELSGGIAKIASMDPA EGKSKVEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLAEHYKFDIEKPFEQLSDDVRKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDE LTKFINTQSCQSCGGSRLREEARNVFIEDLNLPVLTQWSIGEAAQYFEKLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKTIHIKTERTQYDANKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHIQLNGATVDEPSPYKKIVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDNCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLTKA
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=944, Percent_Identity=78.3898305084746, Blast_Score=1538, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104933; Mature: 104933
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCCEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGEPLAAQTVSQMVDKVLDLPEDSRQMLLAPVVNNRKGEHVKLLESLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCHHHHHHHHCCCCEEEEEEC GEVCDLTDPPELDLHVKHTIEVVVDRFKVRGDIKQRLAESFETALELSGGIAKIASMDPA CCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC EGKSKVEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIT CCHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHEE NTELSLAGGAIRGWDRRNFYYFQMLTSLAEHYKFDIEKPFEQLSDDVRKIVLYGSGNQSI CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCEE AFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELTKFINTQSCQSCGGSRLRE EEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH EARNVFIEDLNLPVLTQWSIGEAAQYFEKLELTGQRAQIADKILKEVRDRLGFLVNVGLN HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEHCCCCH YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRD HEEECCCCCCCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHH LGNTVIVVEHDEDAIRMADHVIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEK CCCEEEEEECCCCHHHHHHHHEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEECCCE TIHIKTERTQYDANKLIELFGASGNNLKDVDLQIPVGLFTCITGVSGSGKSTLINDTFYK EEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECCCEEE IAHIQLNGATVDEPSPYKKIVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA EEEEEECCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDNCKGQRYNRETL HHHHHHHCCCCCCCEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEE DVRFKGKNIHEVLQMTVEEARPFFDAIPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQ EEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHH RVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIK HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE TADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLTKA ECCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MENIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCCEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGEPLAAQTVSQMVDKVLDLPEDSRQMLLAPVVNNRKGEHVKLLESLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCHHHHHHHHCCCCEEEEEEC GEVCDLTDPPELDLHVKHTIEVVVDRFKVRGDIKQRLAESFETALELSGGIAKIASMDPA CCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC EGKSKVEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIT CCHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHEE NTELSLAGGAIRGWDRRNFYYFQMLTSLAEHYKFDIEKPFEQLSDDVRKIVLYGSGNQSI CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCEE AFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELTKFINTQSCQSCGGSRLRE EEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH EARNVFIEDLNLPVLTQWSIGEAAQYFEKLELTGQRAQIADKILKEVRDRLGFLVNVGLN HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEHCCCCH YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRD HEEECCCCCCCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHH LGNTVIVVEHDEDAIRMADHVIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEK CCCEEEEEECCCCHHHHHHHHEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEECCCE TIHIKTERTQYDANKLIELFGASGNNLKDVDLQIPVGLFTCITGVSGSGKSTLINDTFYK EEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECCCEEE IAHIQLNGATVDEPSPYKKIVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA EEEEEECCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDNCKGQRYNRETL HHHHHHHCCCCCCCEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEE DVRFKGKNIHEVLQMTVEEARPFFDAIPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQ EEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHH RVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIK HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE TADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLTKA ECCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]