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The map label for this gene is ubiD [H]

Identifier: 157960350

GI number: 157960350

Start: 635435

End: 636916

Strand: Reverse

Name: ubiD [H]

Synonym: Spea_0521

Alternate gene names: 157960350

Gene position: 636916-635435 (Counterclockwise)

Preceding gene: 157960353

Following gene: 157960349

Centisome position: 12.31

GC content: 49.66

Gene sequence:

>1482_bases
ATGAGTTTTAAGGATTTACGCAGCTTTATAGACCACTTAGAAACCAATGGTGAGCTTAAGCGTATTAGTCATCCCGTCGA
TCCTCATTTGGAAATGACAGAGATTGCCGATCGTGTACTACGCGCCAAAGGTCCAGCTCTGTTATTCGAAAATCCTGTCG
GCAACGACATGCCTGTGCTTGCTAACCTTTTTGGTACCCCAAAACGGGTGGCGATGGCATTAGGTAAAGAAGATCCCCTC
GCGCTACGCGATGTGGGTGAGCTGCTGGCTTTTTTAAAAGAGCCTGAGCCTCCTCGCGGTTTTAAAGACGCTATCTCAAA
AATCCCTATGTTTAAGCAAGCCTTAAACATGCCGCCAAAGACAGTGCGTAACCCACCTTGCCAACAAGTGGTTAAAACCG
GTGACGAGGTCGACTTAACTAAATTGCCTATTCAGCACTGCTGGCCAGGCGATGTGGCGCCGCTTGTCACTTGGGGATTA
ACCATCACCAAGGGCCCACGCCAAAAACGCCAAAACTTGGGTATTTACCGCCAGCAATTACTCGGTAGAGACAAGTTAAT
TATGCGCTGGCTTGACCATCGCGGCGGCGCACTAGATTTTAAAGATTTCAAAGAGAAGCACCCAGGTGAACGTTATCCAG
TAGTCGTGGCATTAGGCGCCGATCCGGTGACCATTTTAGGCGCGGTAACGCCAGTGCCGGATGCCATGAGCGAGTATGCC
TTTGCTGGCCTGCTGCGCGGTGAACGCACCGAAGTCTGTAAAGCGTTAAGCTGTGACTTAGAAGTACCCGCCACCAGCGA
AATCATCTTAGAAGGTTATATCGATCCTGACGAGATGGCTGAAGAAGGCCCGTACGGCGATCACACAGGTTACTACAACG
AAACAGACTCTTTCCCTGTGTTTACGGTGACGCACATCACCCACAGAAAAGATGCCATCTACCACAGCACCTACACCGGC
CGTCCACCAGATGAGCCAGCCATGCTAGGTGTGGCACTGAATGAAGTTTTTGTACCAATTCTGCGTAAGCAATACCCTGA
GATTATTGACTTTTACCTGCCGCCTGAAGGCTGCTCGTACCGTATGGCGGTGATCTCTATCCGTAAGCAATATCCAGGAC
ATGCCAAGCGGGTGATGATGGGCGCATGGTCTTTCCTACGTCAGTTTATGTACACCAAGTTTATTGTGGTGGTCGACGAG
GATGTAAATTGTCGCGACTGGAACGATGTGATTTGGGCTATTACCACCCGTATGGATCCTAAGCGTGACACTGTCATGAT
CGAAAACACCCCAATCGATTATCTCGACTTTGCCTCACCGGTTGCAGGTCTTGGCTCTAAAATGGGTATGGATGCCACTA
ACAAATGGGAAGGCGAAACCGATCGTGAATGGGGTACCCCTATCGTGATGGATGAAGCTGTGAAGCAAAAAGTCGATGCT
ATTTGGGATGACCTAGGCATTGATGACGCACCGACCCTATAA

Upstream 100 bases:

>100_bases
TAATTGCTATGCCACGCTTTGATGAACAAGCGTTTAACGCACGTTGGAATGGTGCTATAGTGCGCGCCATATCACAGTTT
ATAGCGATGAGAATTCCCCT

Downstream 100 bases:

>100_bases
TTTTACCTTGCCAAAAATTAGCGAGGGTTTATGTTGCCTGCTGCAGGTTAGCAGGCAGATAAATTTAGACTGAATAAGCT
TCCAAAGAGAAGCTCATCAA

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPPCQQVVKTGDEVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGRDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPDEMAEEGPYGDHTGYYNETDSFPVFTVTHITHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWEGETDREWGTPIVMDEAVKQKVDA
IWDDLGIDDAPTL

Sequences:

>Translated_493_residues
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPPCQQVVKTGDEVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGRDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPDEMAEEGPYGDHTGYYNETDSFPVFTVTHITHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWEGETDREWGTPIVMDEAVKQKVDA
IWDDLGIDDAPTL
>Mature_492_residues
SFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPLA
LRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPPCQQVVKTGDEVDLTKLPIQHCWPGDVAPLVTWGLT
ITKGPRQKRQNLGIYRQQLLGRDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYAF
AGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPDEMAEEGPYGDHTGYYNETDSFPVFTVTHITHRKDAIYHSTYTGR
PPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDED
VNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWEGETDREWGTPIVMDEAVKQKVDAI
WDDLGIDDAPTL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=74.9486652977413, Blast_Score=786, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=450, Percent_Identity=24.6666666666667, Blast_Score=117, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55508; Mature: 55377

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVL
CCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPK
HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVRNPPCQQVVKTGDEVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HCCCCCHHHHHHCCCCCCEECCCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGRDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPDEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHITHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWEGETDREWGTPIVMDEAVKQKVDA
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWDDLGIDDAPTL
HHHHCCCCCCCCC
>Mature Secondary Structure 
SFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVL
CHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPK
HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVRNPPCQQVVKTGDEVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HCCCCCHHHHHHCCCCCCEECCCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGRDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPDEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHITHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWEGETDREWGTPIVMDEAVKQKVDA
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWDDLGIDDAPTL
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA