| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is yciR [C]
Identifier: 157960190
GI number: 157960190
Start: 413908
End: 416529
Strand: Reverse
Name: yciR [C]
Synonym: Spea_0361
Alternate gene names: 157960190
Gene position: 416529-413908 (Counterclockwise)
Preceding gene: 157960191
Following gene: 157960188
Centisome position: 8.05
GC content: 42.75
Gene sequence:
>2622_bases ATGTTTAGGGAAGAAACATCTCAGTCAAAAGTGACATTGAGATTGAATAAAAGGATTACTCGTTTAAAAAAGTTGGCGCT GAAATACAAGCGTGCAGAGATAACTCAAAATGCGCTACTAGAGATCTCTAACTTTGCAGCAAGAGTTACCACTCCTGAAG AATTCTATTTATCACTGCATAAGTCGATCAAAAAACTGATCCCTGCAGATAACTTTTTCATCGCCACACTCAACTCGACC ACAGGCAAGATTGAAATCCCTTTCTTTCAAGATGAGAAAGACGTACACCCTAGAGACTGCTATCCCAACGAAGAGTTATC CGACACTTTGTCCAGTGGACTAACTGGCTACGTGCTCAAAACAGATCAAACATTGATCTGTGATGATGAAACCTACCGCC AACTTGTCGAGTCAAAAGCCATCACGCCGCGGGGCAGCCATTTCCATCAATGGGTAGGCACTCCGATTAGAAGCGTCGAT AGCACCATAGGTGTATTAGTCTTTCAAAGTTATAGCCGTGACACCCTCTATAATGAGATACAGATTGAGCTAATGAACTT CATTAGCCACCATATTTCTGGAGTGATTCAAAAGCTGCAAAATCAAGAGCAGTTAGAGCAAGCAATAAACACCCGCACCA AAGAGTTAAGCATCGCGTATAACAAACTAAAGCAAGAAGTCTATGAAAGGCGCCGCGCTGAACGTCTACAAAAGTCACTG TTTGAGATCGCAGACTTGGCGAACTCAAATATCGATAACCAAGAGTTCTACAGCGAGATCCATCGCGTCATTAGCCATTT ACTGCCAATCAATAACTGCTTTATCTCGCAGCTTAATGAAAAACGAAATGCTATCACCTTTCCCTATTTCGTCTCTCAGT TTGACCAGACCTTGCCAAAACCTCGAGCCCTAAGTGATGGTTTAACCGAGTACATCCTAATGCATAGCAAGCCCAGGTTA CTCAATCGAAATGATATTAATGAGCTTGTTGAATCGGGGGTTATCTATTGCGAAGCACCTGAGCTAAATGAAACCCAAGA GATCAACCAATGGATAGGTATCCCCCTGTTTATTCATGGTCAAGTCTGCGGTGCACTGACGGTTTACAGTTATAGTTTTA GCCAAAACTATCAAGAGAAAGACCTAGAGTTACTTACTTTTGTCTCTCACCACATTGCGACTGCGATTGAGAAAAAATTA TCTGCCGAGTCATTAAAGCTAAGCTACGAGCAGTTAGAAGACAAAGTTAATCAACGAACTAAGGCATTAGAGAGCGTTAA TCAAGATCTTGAAAAGGAGATTAACCAACGTAAATGTATCGAACGCCAGTTAGTGCACGATGCCAAGCATGACAATTTGA CAGGCCTTCCCAATCGCTCCATGTTTATGGAGCGCTTAACTCAAGCAATAAAGCATGTGCGTAGGCATAGTCTTAATAGA TTTGCCGTACTCTTTATTGATATGGACAGATTTAAGCTGCTTAACGACACCCTAGGCCACCTACAAGGCGACCGCTTCTT AATTGAAACGGCAAAACGCCTGCAACAGTGTATTCGTAGCAATGACATGCTCGCCCGCCTAGGAGGTGATGAGTTTGTTA TTTTTCTCGATAGTATCAATGGTCAGCAGGATGCAGAAGATGTAGCAGAAAGAGTATTGGCCGAGCTGTCCAGGCCTTAT GAGCTTGCTAACCAGCAATTTAACTCTAGTGCCAGCATTGGCCTTGCGATGAGCGGACTCAGCCATTCAGACACTAGCGA GTCGATACTTCGAGATGCCGATACGGCGATGTACCAAGCAAAATCACATGGTAAAGGCTGCTATGTGATCTTTAATCATG GGGTGAATCAGCAACAGATTAAAGATATCAAGCTAGAAAACGAACTTAAAAATGCTCTACTCAATCAAGAGTTAAAACTC AGTTACCTGCCAATCATGGCATTGGGCTCACAACAAACTCTGGCTTTCGAGCCTAGGCTATTCTGGCATCACCCGACTTT AGGCAAGTTAAAGCAAGCACAACTGAACAATATCGCCGAGCATTGCAACATGGTGATTGAACTCGACAATTACTTATTAG AGTTGGTTAATCAGAGCTATCATCACATGCAACTGGAATATGGCAGTCAACTTCAACTACATGTGTCTATCTCGAGTCAG CACTTGAATCATAAGTATGCGTTAAGAGCCCTTAAAAATAGAGTTAAGCAGTGCCAATTCAATATTAACGAGTTGACCCT GTTTTTTAATGAAAAGGCCTTCGTGCAAAACACCAATAATCACATCAGCGCCTTCGATAGCCTCAGCAAACTTGATGTCA AACTTGGGATTGAAGCCTATGGCAGTGCGCACAGCGCGATCAGTAGCTTGACCTTCCTCCCCATTCAAGCACTAAAACTC GACTCTAGCTATGCCGCTCACCTAAACAGTCAGCAACATGTTAAGTTGGTAAAAGCCTACTTTAATGCGGCTCAGGCTCT AGAGTTTGAGATCTTCGCCGTAGGAATAAGCAATCACAAACAGTGCGCTATATTGCAGGAGTTAGGATTTACTAAAGGCC AAGGTAGCCTATTAGGTAATGTGATTGAGTTAGAGACAAACAAAAACAGGGTATGTGCCTAA
Upstream 100 bases:
>100_bases AAGCGTCAAAATAATGACTTGGATATGCCTCTATTTCGTGTTATCAATATGTATCAGCTCAAATCATAACCAAATTTAAA GTGGCGATTGGCGGAACAAC
Downstream 100 bases:
>100_bases TTTAAGCCAATACCCAGCTTTAAGAAACAAGCACTACTTATTCTTGAACATATCTCTTATGTTGGCGATATTCGTTTTCC CAGACTGCTGACGCTGCTCT
Product: GAF sensor-containing diguanylate cyclase/phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 873; Mature: 873
Protein sequence:
>873_residues MFREETSQSKVTLRLNKRITRLKKLALKYKRAEITQNALLEISNFAARVTTPEEFYLSLHKSIKKLIPADNFFIATLNST TGKIEIPFFQDEKDVHPRDCYPNEELSDTLSSGLTGYVLKTDQTLICDDETYRQLVESKAITPRGSHFHQWVGTPIRSVD STIGVLVFQSYSRDTLYNEIQIELMNFISHHISGVIQKLQNQEQLEQAINTRTKELSIAYNKLKQEVYERRRAERLQKSL FEIADLANSNIDNQEFYSEIHRVISHLLPINNCFISQLNEKRNAITFPYFVSQFDQTLPKPRALSDGLTEYILMHSKPRL LNRNDINELVESGVIYCEAPELNETQEINQWIGIPLFIHGQVCGALTVYSYSFSQNYQEKDLELLTFVSHHIATAIEKKL SAESLKLSYEQLEDKVNQRTKALESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNR FAVLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSINGQQDAEDVAERVLAELSRPY ELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQAKSHGKGCYVIFNHGVNQQQIKDIKLENELKNALLNQELKL SYLPIMALGSQQTLAFEPRLFWHHPTLGKLKQAQLNNIAEHCNMVIELDNYLLELVNQSYHHMQLEYGSQLQLHVSISSQ HLNHKYALRALKNRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAYGSAHSAISSLTFLPIQALKL DSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHKQCAILQELGFTKGQGSLLGNVIELETNKNRVCA
Sequences:
>Translated_873_residues MFREETSQSKVTLRLNKRITRLKKLALKYKRAEITQNALLEISNFAARVTTPEEFYLSLHKSIKKLIPADNFFIATLNST TGKIEIPFFQDEKDVHPRDCYPNEELSDTLSSGLTGYVLKTDQTLICDDETYRQLVESKAITPRGSHFHQWVGTPIRSVD STIGVLVFQSYSRDTLYNEIQIELMNFISHHISGVIQKLQNQEQLEQAINTRTKELSIAYNKLKQEVYERRRAERLQKSL FEIADLANSNIDNQEFYSEIHRVISHLLPINNCFISQLNEKRNAITFPYFVSQFDQTLPKPRALSDGLTEYILMHSKPRL LNRNDINELVESGVIYCEAPELNETQEINQWIGIPLFIHGQVCGALTVYSYSFSQNYQEKDLELLTFVSHHIATAIEKKL SAESLKLSYEQLEDKVNQRTKALESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNR FAVLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSINGQQDAEDVAERVLAELSRPY ELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQAKSHGKGCYVIFNHGVNQQQIKDIKLENELKNALLNQELKL SYLPIMALGSQQTLAFEPRLFWHHPTLGKLKQAQLNNIAEHCNMVIELDNYLLELVNQSYHHMQLEYGSQLQLHVSISSQ HLNHKYALRALKNRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAYGSAHSAISSLTFLPIQALKL DSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHKQCAILQELGFTKGQGSLLGNVIELETNKNRVCA >Mature_873_residues MFREETSQSKVTLRLNKRITRLKKLALKYKRAEITQNALLEISNFAARVTTPEEFYLSLHKSIKKLIPADNFFIATLNST TGKIEIPFFQDEKDVHPRDCYPNEELSDTLSSGLTGYVLKTDQTLICDDETYRQLVESKAITPRGSHFHQWVGTPIRSVD STIGVLVFQSYSRDTLYNEIQIELMNFISHHISGVIQKLQNQEQLEQAINTRTKELSIAYNKLKQEVYERRRAERLQKSL FEIADLANSNIDNQEFYSEIHRVISHLLPINNCFISQLNEKRNAITFPYFVSQFDQTLPKPRALSDGLTEYILMHSKPRL LNRNDINELVESGVIYCEAPELNETQEINQWIGIPLFIHGQVCGALTVYSYSFSQNYQEKDLELLTFVSHHIATAIEKKL SAESLKLSYEQLEDKVNQRTKALESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNR FAVLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSINGQQDAEDVAERVLAELSRPY ELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQAKSHGKGCYVIFNHGVNQQQIKDIKLENELKNALLNQELKL SYLPIMALGSQQTLAFEPRLFWHHPTLGKLKQAQLNNIAEHCNMVIELDNYLLELVNQSYHHMQLEYGSQLQLHVSISSQ HLNHKYALRALKNRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAYGSAHSAISSLTFLPIQALKL DSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHKQCAILQELGFTKGQGSLLGNVIELETNKNRVCA
Specific function: Unknown
COG id: COG2199
COG function: function code T; FOG: GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MHYT domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=30.8433734939759, Blast_Score=204, Evalue=3e-53, Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=22.877358490566, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI87081977, Length=232, Percent_Identity=32.3275862068966, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=33.1491712707182, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=38.2716049382716, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=34.0909090909091, Blast_Score=91, Evalue=5e-19, Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=21.4622641509434, Blast_Score=90, Evalue=6e-19, Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=34.5029239766082, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=33.1395348837209, Blast_Score=80, Evalue=7e-16, Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=30.8988764044944, Blast_Score=80, Evalue=8e-16, Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=31.3725490196078, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=21.0743801652893, Blast_Score=64, Evalue=5e-11, Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=24.1803278688525, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]
EC number: NA
Molecular weight: Translated: 99927; Mature: 99927
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFREETSQSKVTLRLNKRITRLKKLALKYKRAEITQNALLEISNFAARVTTPEEFYLSLH CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KSIKKLIPADNFFIATLNSTTGKIEIPFFQDEKDVHPRDCYPNEELSDTLSSGLTGYVLK HHHHHHCCCCCEEEEEECCCCCEEEECEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEE TDQTLICDDETYRQLVESKAITPRGSHFHQWVGTPIRSVDSTIGVLVFQSYSRDTLYNEI CCCEEEECCHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHH QIELMNFISHHISGVIQKLQNQEQLEQAINTRTKELSIAYNKLKQEVYERRRAERLQKSL HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEIADLANSNIDNQEFYSEIHRVISHLLPINNCFISQLNEKRNAITFPYFVSQFDQTLPK HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCC PRALSDGLTEYILMHSKPRLLNRNDINELVESGVIYCEAPELNETQEINQWIGIPLFIHG CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEC QVCGALTVYSYSFSQNYQEKDLELLTFVSHHIATAIEKKLSAESLKLSYEQLEDKVNQRT CHHHHHEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC FAVLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSIN EEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCC GQQDAEDVAERVLAELSRPYELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQA CCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH KSHGKGCYVIFNHGVNQQQIKDIKLENELKNALLNQELKLSYLPIMALGSQQTLAFEPRL HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEECCEE FWHHPTLGKLKQAQLNNIAEHCNMVIELDNYLLELVNQSYHHMQLEYGSQLQLHVSISSQ EECCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCHHHEEEEECCCEEEEEEEECCH HLNHKYALRALKNRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAY HCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEECCCCHHHHHHHHHHHHHEECHHHH GSAHSAISSLTFLPIQALKLDSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHK CCHHHHHHHHHHHHHHHEEECCHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCC QCAILQELGFTKGQGSLLGNVIELETNKNRVCA HHHHHHHCCCCCCCCCHHCCEEEEECCCCCCCC >Mature Secondary Structure MFREETSQSKVTLRLNKRITRLKKLALKYKRAEITQNALLEISNFAARVTTPEEFYLSLH CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KSIKKLIPADNFFIATLNSTTGKIEIPFFQDEKDVHPRDCYPNEELSDTLSSGLTGYVLK HHHHHHCCCCCEEEEEECCCCCEEEECEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEE TDQTLICDDETYRQLVESKAITPRGSHFHQWVGTPIRSVDSTIGVLVFQSYSRDTLYNEI CCCEEEECCHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHH QIELMNFISHHISGVIQKLQNQEQLEQAINTRTKELSIAYNKLKQEVYERRRAERLQKSL HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEIADLANSNIDNQEFYSEIHRVISHLLPINNCFISQLNEKRNAITFPYFVSQFDQTLPK HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCC PRALSDGLTEYILMHSKPRLLNRNDINELVESGVIYCEAPELNETQEINQWIGIPLFIHG CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEC QVCGALTVYSYSFSQNYQEKDLELLTFVSHHIATAIEKKLSAESLKLSYEQLEDKVNQRT CHHHHHEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC FAVLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSIN EEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCC GQQDAEDVAERVLAELSRPYELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQA CCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH KSHGKGCYVIFNHGVNQQQIKDIKLENELKNALLNQELKLSYLPIMALGSQQTLAFEPRL HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEECCEE FWHHPTLGKLKQAQLNNIAEHCNMVIELDNYLLELVNQSYHHMQLEYGSQLQLHVSISSQ EECCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCHHHEEEEECCCEEEEEEEECCH HLNHKYALRALKNRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAY HCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEECCCCHHHHHHHHHHHHHEECHHHH GSAHSAISSLTFLPIQALKLDSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHK CCHHHHHHHHHHHHHHHEEECCHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCC QCAILQELGFTKGQGSLLGNVIELETNKNRVCA HHHHHHHCCCCCCCCCHHCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]