| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is phoB [H]
Identifier: 157960131
GI number: 157960131
Start: 338086
End: 339288
Strand: Reverse
Name: phoB [H]
Synonym: Spea_0302
Alternate gene names: 157960131
Gene position: 339288-338086 (Counterclockwise)
Preceding gene: 157960132
Following gene: 157960130
Centisome position: 6.56
GC content: 45.22
Gene sequence:
>1203_bases TTGGGCAAAGAAATCCTACTCGTTGAAGATAACAAGGTCATGCAACTCTTGATGACTAAAATGCTGTCTTCAAGAGGCTA TCAAGTCGTTACCGCATTTGATGGAGTTGACGCCATTGCCCAACTTGAAAAACATCCCTCAATCCAATTAGTCCTCAGTG ATTGGATGATGCCGAAGTTAAACGGCATCGAGCTCTGTTATCACTTAAAATCCTCCGACTATGGCCGCTACATCTTCTTT GTTTTGCTATCAGGGCGCGATGACGAGGAGTCGATTGTTGAAGGTATTAATGCCGGAGCCGATGACTTTGTCGCCAAAGA AACCAACATCAATGAACTCGATGCTCGCCTTAAAGCAGGCTTTAGAAGCCTAGAATTGCATAATCAGTTGATGTCCAAAA ACATCGAACTCGATCGCGCTTATGCCACAATCCGCCAAGATCTAGACTCAGCTAACGCCCTTATCCGCCGTATGCTACCA AGTCAGACTGAGTTTCTAGGAGTCGAGCTACATTACACTCATATTCCCAGCGCACAAATAGGCGGCGATATGCTGGGATG CATGCAACTAGATGAAGAGCATGTTGCCATTTATCTATTTGACGTCGCCGGTCATGGGGTTGCCTCTGCACTGATGTCAT TCGCTATTCAGCAAAGCATTAGCTCCAACTCTGGAACCCATTCACATGTGAAGGGGAAGAAAGACACCGATCCATTTTAT ATGCTGAGAGATCCAAGTGAAGTGCTGGCAAGGCTCAATCAAAGCTATTTGAGCCAAGACAATAACAATCTGTATTTCAC TATGGTTTATGCGGTGTTAAATATTAAGAGCGGCCTCTTAAGCTACGCCAGTGCCGGACATCCACCAATGATCTGGCTAC AAACGCAATCACAAACGGCGCATTTTATCGAGCAGGACAGCTTTGTGGCAGGCATGTTCGACTTTGCCAGTTATCAAACC GAACTGGTTCAGCTCGAACAAGGCGACCGCATCTTACTGTATTCAGACGGCATCACCGAAGCAGAGTCAGCTAGCAAAGA GCAATACTCCGAACAAGGCTTAAAAAGCCTGGTGCAAGAGTTGGCTTCTCACCCTACAAAATCACAAACTGAAACCATAG TAAATGCAGTTAAAGACTGGTGCGGTATAGAGCAATTTGATGACGACGTGAGTTTATTAGCCTTTGAATGGAAAGGTAAT TAA
Upstream 100 bases:
>100_bases GTATTCTAAAATCACTACTAGACTTCTGAAAGTAAAAGGACTTATTAAAAATCCTAGCGTTTTTCGCTCGGTAATAAGCT ACGGCACGGAGGCTGAAAGT
Downstream 100 bases:
>100_bases AAAAAGGAAATATCATGCAATTTGAAATAATTGAAAAGGGTCAGTATACCGTTATTCAAGTCAATGAAGCTCGATTTGAT GCGAGGCTAGCCCCGTCTTT
Product: response regulator receiver modulated serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKLNGIELCYHLKSSDYGRYIFF VLLSGRDDEESIVEGINAGADDFVAKETNINELDARLKAGFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLP SQTEFLGVELHYTHIPSAQIGGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDPFY MLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQTAHFIEQDSFVAGMFDFASYQT ELVQLEQGDRILLYSDGITEAESASKEQYSEQGLKSLVQELASHPTKSQTETIVNAVKDWCGIEQFDDDVSLLAFEWKGN
Sequences:
>Translated_400_residues MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKLNGIELCYHLKSSDYGRYIFF VLLSGRDDEESIVEGINAGADDFVAKETNINELDARLKAGFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLP SQTEFLGVELHYTHIPSAQIGGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDPFY MLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQTAHFIEQDSFVAGMFDFASYQT ELVQLEQGDRILLYSDGITEAESASKEQYSEQGLKSLVQELASHPTKSQTETIVNAVKDWCGIEQFDDDVSLLAFEWKGN >Mature_399_residues GKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKLNGIELCYHLKSSDYGRYIFFV LLSGRDDEESIVEGINAGADDFVAKETNINELDARLKAGFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPS QTEFLGVELHYTHIPSAQIGGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDPFYM LRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQTAHFIEQDSFVAGMFDFASYQTE LVQLEQGDRILLYSDGITEAESASKEQYSEQGLKSLVQELASHPTKSQTETIVNAVKDWCGIEQFDDDVSLLAFEWKGN
Specific function: This protein is a positive regulator for the phosphate regulon. Transcription of this operon is positively regulated by phoB and phoR when phosphate is limited [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=124, Percent_Identity=38.7096774193548, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787487, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87082012, Length=119, Percent_Identity=31.0924369747899, Blast_Score=62, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR011879 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 44768; Mature: 44637
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEEEECCCCCCCC NGIELCYHLKSSDYGRYIFFVLLSGRDDEESIVEGINAGADDFVAKETNINELDARLKAG CCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHC FRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPSQTEFLGVELHYTHIPSAQI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHH GGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDPFY CCCHHHHHEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE MLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQTA EEECHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH HFIEQDSFVAGMFDFASYQTELVQLEQGDRILLYSDGITEAESASKEQYSEQGLKSLVQE HHHHCCCHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LASHPTKSQTETIVNAVKDWCGIEQFDDDVSLLAFEWKGN HHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC >Mature Secondary Structure GKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEEEECCCCCCCC NGIELCYHLKSSDYGRYIFFVLLSGRDDEESIVEGINAGADDFVAKETNINELDARLKAG CCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHC FRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPSQTEFLGVELHYTHIPSAQI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHH GGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDPFY CCCHHHHHEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE MLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQTA EEECHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH HFIEQDSFVAGMFDFASYQTELVQLEQGDRILLYSDGITEAESASKEQYSEQGLKSLVQE HHHHCCCHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LASHPTKSQTETIVNAVKDWCGIEQFDDDVSLLAFEWKGN HHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]