| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960105
Identifier: 157960105
GI number: 157960105
Start: 307433
End: 309118
Strand: Reverse
Name: 157960105
Synonym: Spea_0276
Alternate gene names: NA
Gene position: 309118-307433 (Counterclockwise)
Preceding gene: 157960106
Following gene: 157960103
Centisome position: 5.97
GC content: 45.02
Gene sequence:
>1686_bases ATGCCTGTTGTCGATACTAGCCAAGGAGGACTGCTATCTATGGAACGGGTTTGCGGCCTAGCATTATCGATATTTTTTAG CATCCAAGCGGGTGCAGCTTCGGCTGAAAAAAAAATTACCGCTGTCGAAAACAAAGCTGCAGATGATTACCAGCAAAAAA AGCAAACCAAGAATATTGTCATCAAGAGTAATGACATTTTTGACCTATCCGACCCCGAAACTTTTTTTATTCATCGATGG GCCAATTACCTACATATCAATACTCGAGACTTGGTGATCCGCGATAAACTGAGCTTTTCAGAGGGCGATAAAGTCAGCCT AAAAAACTTAGAAGAAGCACAACGACTGCTACGGGCGCAAGCCTATCTTCGCGATGCCAGAGTCACATTTTCCCAACCTG CTGCTGATGCCGATCTTGCCGATGAAGGTGAAAATATTCTGGTCGAAACTTGGGACAACTGGTCACTATTACCAACCTTT AGTGCCAGCCATAGCGGTGGGGAGAGCAAGTTTTCGTTCGGTCTTAAAGAAGATAATTTGCTCGGCTACGGCATTCGTAC CCGTATAAAGTATCAATCAAACGTTGATAGAACGGGCTATCTGTTTGCCGTTGAAGCACCTGTGAACGTCATCAAACACG CGACTATCGCCGCAAGCTTTTACGATAATAGCGATGGCCAAGCAAAGCATGTTTATTTTGAAAAACCTTTCTACAGTTTA GATGGCACTCACAGCTACTCCGCCGAATACTTAGATGATTTACGTATCGACACACTCAAACAAAACGGACAGGATATCAG TGAGTTTGAACATATCGAGAGCTATAACAACGCCCATTTAGGTTGGCTAGTCGAGCGCGATAGCAAACAACTCTCAAGAG TTATCACGGGGATTACCCAAGACAGGCACGAGTTCGCTCATGTCGATAGTTACCCTATGTCAGCACTGCCACAAGACCGA GATTTCCTCTACCCATGGATCGCATATCAATATCTACAAGATGACTTTAAGGTGCTCAACAATGTGCACCTAATTAAAAA TAATGAGGACTTTAACTTAGGCTGGCAGCATTATTTTAAGCTCGGTATAGAAACTCGAGATATCAGTGATAACTCACCTA TTGGTTACCATATTGACTTGATATCGAGCCGTGGCTATCAAGGCGATGGACAGCTGGTTTTATTAGGGATGGATGCCAAA GGGGTGTTTGCCACCAGCCAAAAAGATTTCTATCAAGTTAATCTTGCTGCAGAGTACTTCTACCATATCACCCAAAAATG GACTGCCTACTCAAAACTCAGAGTCAGCACTTCGCAAAATAACTACTTAGACGAGCCATTTGCCTTAGGTGATGAGACAG GCGTTCGCGGCTACCCAAATGACTATCAGTATGGCGATCATCAATGGGCCTTTACCGCCGAACTCCGTCACTACCCCAAT ATCAATCTGTATCAGTTAGCCGAGCTCGGCTGGGCAATTTTTACCGATGTGGGCCACGCCTTTGGCGGCCCCGATGAAAA CAATGCGGTGTCATCACCTATCGGCAGTTTCGGTATTGGCGCGCGAATTTATTCATCGAAATCGAGCTACGGCAATGTGG CCCATATCGACTTAAGTGTGCCCTATACATCAGGGCCTGAAGTGAATAGTTGGGAGTGGCGTTTTCAGGTGAAGAGTCAT TTCTAA
Upstream 100 bases:
>100_bases GGCTAAAACCTCTCGACTTTAATCTAACTTCCAAGTTTAGCCTAAGTTAAACAGCCTGTTATTACTTGACTAATCTACAC TTAGCATATGTTATTAATCT
Downstream 100 bases:
>100_bases CCATGTCGTTAATTGGGCGACTAGGCTGAAGTCTATGCTGATAGACGCCTCCTAGGAACCATGGCCAGAAGACGAACTAT ATAAAAAAGCCTCTAATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MPVVDTSQGGLLSMERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIVIKSNDIFDLSDPETFFIHRW ANYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQAYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTF SASHSGGESKFSFGLKEDNLLGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSL DGTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQDRHEFAHVDSYPMSALPQDR DFLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFKLGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAK GVFATSQKDFYQVNLAAEYFYHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPN INLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSVPYTSGPEVNSWEWRFQVKSH F
Sequences:
>Translated_561_residues MPVVDTSQGGLLSMERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIVIKSNDIFDLSDPETFFIHRW ANYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQAYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTF SASHSGGESKFSFGLKEDNLLGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSL DGTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQDRHEFAHVDSYPMSALPQDR DFLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFKLGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAK GVFATSQKDFYQVNLAAEYFYHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPN INLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSVPYTSGPEVNSWEWRFQVKSH F >Mature_560_residues PVVDTSQGGLLSMERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIVIKSNDIFDLSDPETFFIHRWA NYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQAYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTFS ASHSGGESKFSFGLKEDNLLGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSLD GTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQDRHEFAHVDSYPMSALPQDRD FLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFKLGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAKG VFATSQKDFYQVNLAAEYFYHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPNI NLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSVPYTSGPEVNSWEWRFQVKSHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63674; Mature: 63543
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVVDTSQGGLLSMERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIV CCCEECCCCCEEEHHHHHHHHHHHHEEEECCCCCCHHEEEEHHCCCHHHHHHHHHHCCEE IKSNDIFDLSDPETFFIHRWANYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQ EECCCEEECCCCCEEEEEEECCEEEECCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHH AYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTFSASHSGGESKFSFGLKEDNL HHHHHCCEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCE LGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSL EEECEEEEEEECCCCCCCEEEEEECCCHHHHHHHEEEEEEECCCCCCEEEEEEECCEEEC DGTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQ CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC DRHEFAHVDSYPMSALPQDRDFLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFK CHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHEEE LGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAKGVFATSQKDFYQVNLAAEYF ECCEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEECCCCEEEEEEHHHHH YHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPN HHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCC INLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSV CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC PYTSGPEVNSWEWRFQVKSHF CCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure PVVDTSQGGLLSMERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIV CCEECCCCCEEEHHHHHHHHHHHHEEEECCCCCCHHEEEEHHCCCHHHHHHHHHHCCEE IKSNDIFDLSDPETFFIHRWANYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQ EECCCEEECCCCCEEEEEEECCEEEECCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHH AYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTFSASHSGGESKFSFGLKEDNL HHHHHCCEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCE LGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSL EEECEEEEEEECCCCCCCEEEEEECCCHHHHHHHEEEEEEECCCCCCEEEEEEECCEEEC DGTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQ CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC DRHEFAHVDSYPMSALPQDRDFLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFK CHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHEEE LGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAKGVFATSQKDFYQVNLAAEYF ECCEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEECCCCEEEEEEHHHHH YHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPN HHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCC INLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSV CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC PYTSGPEVNSWEWRFQVKSHF CCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA