| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is mrcA [H]
Identifier: 157960061
GI number: 157960061
Start: 261398
End: 263947
Strand: Reverse
Name: mrcA [H]
Synonym: Spea_0232
Alternate gene names: 157960061
Gene position: 263947-261398 (Counterclockwise)
Preceding gene: 157960071
Following gene: 157960055
Centisome position: 5.1
GC content: 47.65
Gene sequence:
>2550_bases GTGAAGTGGTTTAAACGACTTTTAATAGCTTTCTTTAGCCTTGGCTTGCTAGGCATCGGAGCGATAGCTGCAGCTTATTT TTATGTGCTGCCAGATCTCCCTGATGTTACGACGTTAAAGACAGTAAAATTACAAACACCACTTCGCATTTACAGTAGTG ATGGGAAGCTGATCTCTCAATTTGGTGAAAAGCGCCGTATTCCACTTACGTTAGAAGAGGTGCCCAAGCCTCTACTACAA GCTTTTATCGCTACCGAAGATGCACGCTTCTACGAACACAAAGGTATCGACCCAATCGGTATTTTACGTGCTGCATCTGT GATGCTAACCACAGGCCAAAAGAAGCAAGGTGCGAGTACCATCACCATGCAGGTAGCACGTAACTTCTTTTTGACCCGCG ATAAGACCATAATACGCAAAGTAAAAGAGATCTTTATCTCGATCCATATCGAGCAACTGCTCACCAAAGATGAAATTCTA GAACTGTATGTTAACCGTATCTACCTAGGTCAGCGTGCCTACGGGGTAGGCGCTGCCGCACAAGTGTATTATGGAAAAGA AGTGAGCGAGCTGACTCTGCCGGAAATGGCGGTGATTGCAGGCCTACCGAAAGCACCGTCAACGCTGAACCCTATTACCT CAAAAGCACGTGCAAAAGCGCGTCGCAATGTTGTGTTAATGCGAATGAACGAGGTTGGCTATATCAATAATGCTGAGTAT CAAGCTGCAATTGCTAGCCCGATTACCGCTAAATACCACGGCGCAGTCATCGATCTGTATGCCCCCTATATTTCTGAAAT GGCCCGTGACTATTTAGTCGATAAACTGGGCGAAGAAGAAGCCTATACAGGCGGTTATGACATCTATACCACTGTCAGTT CTAAACTGCAGCTAGATGCTCAAAAAGCACTGCGTAACAATGTGTACTCTTATGACGAACGCCATGGTTACCGTGGCAGA GTAAAAGAGCTATGGACAAAAACAGCCCTCGAACCTGAAGAGATCACAGCCAGATTAAAGCAAACTGGAGCATTCCAAGG CATGTTCCCTGCAGCTGTATTATCTGTAAATGAGCAGACCGCGACAGTGATGAATGCAAAAGGTGAAACTATCGAGCTAC CTTGGGATGGCATCAAGTGGGCGCGTAAGTTTATCACCAACAAACGTCAAGGTAAGGCACCTAAACTCGCCTCAGATGTA TTGAAACCTGGCGAACAAGTGTGGATCCGCAACAATGGCAACTTCTGGCAACTAAGCCAAGTGCCATTAGTTGCCAGCGC CCTAGTATCTCTAGATCCACATGACGGCGCGATTCGCACCTTGGTGGGTGGCTTCAGCTTCTATACAAGCCAATATAACC GTGTAACTCAGGCTAAGCGCCAGTTAGGTTCGAACATTAAACCTTTCATCTATAGCGCGGCGTTAGAGAAAGGCTACACC CTTGCCACCCTTATTAACAACGCGCCAATTAATAAGCCTGATACTAGACAAGGCACAGCTTGGCGCCCTAAGAATTCACC GGATGTTTATGGTGGTCCAACTCGTCTACGTGTAGGCTTAGCGCAATCGATCAACGTGATGTCTGTGAGAGCCATGCGCT ATGCTGGTCTGGATGCCACAATTGCCGAACTGGTAAAGTTTGGTTTTGACCCAGCCGACTTACCACGCAATGAATCGATT GCTTTAGGCTCACCATCGGTAACACCGCTGCAAGTCGTCACCGCGTTCTCAGTGTTCGCTAACGGTGGCTACCTAGTCGA ACCGTACTTTATCGAACGGGTAGAAACAGCAAGCGGTGATATCGTAGAACAAGCTAACCCAACACTAGCTTGTAAGCCTG TGGTGACAGAGCCAGTAATTAATGATGATCCTTTTGCCGCTATGGCAAATGAACTTCAAGCGAGCACGACACCTTTAGAA AACTTATCCGCCGTTAATGCAATCCATCAATGTGGCGACGCAGATTCGCGTTATGCACCACAGATTATTTCGGAGCAGAC TGCCTTCTTAGTCACCGAATCACTAAAGAGTGTTATTTGGGGTGGCGGCAACTGGAGTAAAGGTACAGGTTGGAACGGTA CGGCATGGCGTGCTGCCCGAGTGGTGAAACGTCGCGATATTGCTGGCAAGACAGGTACAACCAACGAGTCTCGTGATACT TGGTTTAGTGGTTTTAACCCTAAACTTGCCACCACAGTTTGGGTCGGTTTCGATGATCACAGCCAAGAGCTAGGTCGTAC TAGCTGGAATGCTAACGGTGCCAAAGATCAGATATCTTTAGCTGAAGCCGGTGCAAAAACCGCAGGCCCTGGTTGGAATG AGTTTATGAAGGATGCCTTGGCGGGTACACCAGAAGTGCCAATGGCACCACCAGAAGGTATCGTATCGGCACGAATCGAC CTAGCGACTGGTAAGCTGACCCGCAAAACCGATCACACCAGCAGGTTTGAGTACTTTATTGCTGGCACTGAACCGACGGA ATACGTGACAGAGCAAGAAGATAACAGCGATATCTTTATCGATGAGCCAGATGAAGATCTATTCCAGTAG
Upstream 100 bases:
>100_bases TATCAAGAAAAAAGCTCAGGCTAATCTGTTAACAAGACTTCACCATTTCCGCCTTGGCTTATATACTATTGTTCTTATTT TTTGTTCTTGGAATATTGCG
Downstream 100 bases:
>100_bases ACCTTTTCTCGTAAACCTATTCCAGTAAACCATAGTCAGAAATAATAAAAACGCGGTCACTCAACAGAATGACCGCGTTT TTTTACACCTACTAATTGCA
Product: 1A family penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MKWFKRLLIAFFSLGLLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSSDGKLISQFGEKRRIPLTLEEVPKPLLQ AFIATEDARFYEHKGIDPIGILRAASVMLTTGQKKQGASTITMQVARNFFLTRDKTIIRKVKEIFISIHIEQLLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKEVSELTLPEMAVIAGLPKAPSTLNPITSKARAKARRNVVLMRMNEVGYINNAEY QAAIASPITAKYHGAVIDLYAPYISEMARDYLVDKLGEEEAYTGGYDIYTTVSSKLQLDAQKALRNNVYSYDERHGYRGR VKELWTKTALEPEEITARLKQTGAFQGMFPAAVLSVNEQTATVMNAKGETIELPWDGIKWARKFITNKRQGKAPKLASDV LKPGEQVWIRNNGNFWQLSQVPLVASALVSLDPHDGAIRTLVGGFSFYTSQYNRVTQAKRQLGSNIKPFIYSAALEKGYT LATLINNAPINKPDTRQGTAWRPKNSPDVYGGPTRLRVGLAQSINVMSVRAMRYAGLDATIAELVKFGFDPADLPRNESI ALGSPSVTPLQVVTAFSVFANGGYLVEPYFIERVETASGDIVEQANPTLACKPVVTEPVINDDPFAAMANELQASTTPLE NLSAVNAIHQCGDADSRYAPQIISEQTAFLVTESLKSVIWGGGNWSKGTGWNGTAWRAARVVKRRDIAGKTGTTNESRDT WFSGFNPKLATTVWVGFDDHSQELGRTSWNANGAKDQISLAEAGAKTAGPGWNEFMKDALAGTPEVPMAPPEGIVSARID LATGKLTRKTDHTSRFEYFIAGTEPTEYVTEQEDNSDIFIDEPDEDLFQ
Sequences:
>Translated_849_residues MKWFKRLLIAFFSLGLLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSSDGKLISQFGEKRRIPLTLEEVPKPLLQ AFIATEDARFYEHKGIDPIGILRAASVMLTTGQKKQGASTITMQVARNFFLTRDKTIIRKVKEIFISIHIEQLLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKEVSELTLPEMAVIAGLPKAPSTLNPITSKARAKARRNVVLMRMNEVGYINNAEY QAAIASPITAKYHGAVIDLYAPYISEMARDYLVDKLGEEEAYTGGYDIYTTVSSKLQLDAQKALRNNVYSYDERHGYRGR VKELWTKTALEPEEITARLKQTGAFQGMFPAAVLSVNEQTATVMNAKGETIELPWDGIKWARKFITNKRQGKAPKLASDV LKPGEQVWIRNNGNFWQLSQVPLVASALVSLDPHDGAIRTLVGGFSFYTSQYNRVTQAKRQLGSNIKPFIYSAALEKGYT LATLINNAPINKPDTRQGTAWRPKNSPDVYGGPTRLRVGLAQSINVMSVRAMRYAGLDATIAELVKFGFDPADLPRNESI ALGSPSVTPLQVVTAFSVFANGGYLVEPYFIERVETASGDIVEQANPTLACKPVVTEPVINDDPFAAMANELQASTTPLE NLSAVNAIHQCGDADSRYAPQIISEQTAFLVTESLKSVIWGGGNWSKGTGWNGTAWRAARVVKRRDIAGKTGTTNESRDT WFSGFNPKLATTVWVGFDDHSQELGRTSWNANGAKDQISLAEAGAKTAGPGWNEFMKDALAGTPEVPMAPPEGIVSARID LATGKLTRKTDHTSRFEYFIAGTEPTEYVTEQEDNSDIFIDEPDEDLFQ >Mature_849_residues MKWFKRLLIAFFSLGLLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSSDGKLISQFGEKRRIPLTLEEVPKPLLQ AFIATEDARFYEHKGIDPIGILRAASVMLTTGQKKQGASTITMQVARNFFLTRDKTIIRKVKEIFISIHIEQLLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKEVSELTLPEMAVIAGLPKAPSTLNPITSKARAKARRNVVLMRMNEVGYINNAEY QAAIASPITAKYHGAVIDLYAPYISEMARDYLVDKLGEEEAYTGGYDIYTTVSSKLQLDAQKALRNNVYSYDERHGYRGR VKELWTKTALEPEEITARLKQTGAFQGMFPAAVLSVNEQTATVMNAKGETIELPWDGIKWARKFITNKRQGKAPKLASDV LKPGEQVWIRNNGNFWQLSQVPLVASALVSLDPHDGAIRTLVGGFSFYTSQYNRVTQAKRQLGSNIKPFIYSAALEKGYT LATLINNAPINKPDTRQGTAWRPKNSPDVYGGPTRLRVGLAQSINVMSVRAMRYAGLDATIAELVKFGFDPADLPRNESI ALGSPSVTPLQVVTAFSVFANGGYLVEPYFIERVETASGDIVEQANPTLACKPVVTEPVINDDPFAAMANELQASTTPLE NLSAVNAIHQCGDADSRYAPQIISEQTAFLVTESLKSVIWGGGNWSKGTGWNGTAWRAARVVKRRDIAGKTGTTNESRDT WFSGFNPKLATTVWVGFDDHSQELGRTSWNANGAKDQISLAEAGAKTAGPGWNEFMKDALAGTPEVPMAPPEGIVSARID LATGKLTRKTDHTSRFEYFIAGTEPTEYVTEQEDNSDIFIDEPDEDLFQ
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=863, Percent_Identity=50.8690614136732, Blast_Score=861, Evalue=0.0, Organism=Escherichia coli, GI1786343, Length=251, Percent_Identity=35.0597609561753, Blast_Score=133, Evalue=4e-32, Organism=Escherichia coli, GI1788867, Length=236, Percent_Identity=37.7118644067797, Blast_Score=129, Evalue=1e-30, Organism=Escherichia coli, GI1789601, Length=165, Percent_Identity=31.5151515151515, Blast_Score=87, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 93610; Mature: 93610
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWFKRLLIAFFSLGLLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSSDGKLISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCCHHHHH FGEKRRIPLTLEEVPKPLLQAFIATEDARFYEHKGIDPIGILRAASVMLTTGQKKQGAST HCCCCCCCEEHHHCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCHH ITMQVARNFFLTRDKTIIRKVKEIFISIHIEQLLTKDEILELYVNRIYLGQRAYGVGAAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCE QVYYGKEVSELTLPEMAVIAGLPKAPSTLNPITSKARAKARRNVVLMRMNEVGYINNAEY EEEECCCHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCH QAAIASPITAKYHGAVIDLYAPYISEMARDYLVDKLGEEEAYTGGYDIYTTVSSKLQLDA HHHHCCCCCHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHH QKALRNNVYSYDERHGYRGRVKELWTKTALEPEEITARLKQTGAFQGMFPAAVLSVNEQT HHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHEECCCHH ATVMNAKGETIELPWDGIKWARKFITNKRQGKAPKLASDVLKPGEQVWIRNNGNFWQLSQ HEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCEEEEEC VPLVASALVSLDPHDGAIRTLVGGFSFYTSQYNRVTQAKRQLGSNIKPFIYSAALEKGYT CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCE LATLINNAPINKPDTRQGTAWRPKNSPDVYGGPTRLRVGLAQSINVMSVRAMRYAGLDAT EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHHHCCCHHHHHHHHHCCCCHH IAELVKFGFDPADLPRNESIALGSPSVTPLQVVTAFSVFANGGYLVEPYFIERVETASGD HHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCC IVEQANPTLACKPVVTEPVINDDPFAAMANELQASTTPLENLSAVNAIHQCGDADSRYAP CHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC QIISEQTAFLVTESLKSVIWGGGNWSKGTGWNGTAWRAARVVKRRDIAGKTGTTNESRDT HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC WFSGFNPKLATTVWVGFDDHSQELGRTSWNANGAKDQISLAEAGAKTAGPGWNEFMKDAL HHCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH AGTPEVPMAPPEGIVSARIDLATGKLTRKTDHTSRFEYFIAGTEPTEYVTEQEDNSDIFI CCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEE DEPDEDLFQ ECCCHHHCC >Mature Secondary Structure MKWFKRLLIAFFSLGLLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSSDGKLISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCCHHHHH FGEKRRIPLTLEEVPKPLLQAFIATEDARFYEHKGIDPIGILRAASVMLTTGQKKQGAST HCCCCCCCEEHHHCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCHH ITMQVARNFFLTRDKTIIRKVKEIFISIHIEQLLTKDEILELYVNRIYLGQRAYGVGAAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCE QVYYGKEVSELTLPEMAVIAGLPKAPSTLNPITSKARAKARRNVVLMRMNEVGYINNAEY EEEECCCHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCH QAAIASPITAKYHGAVIDLYAPYISEMARDYLVDKLGEEEAYTGGYDIYTTVSSKLQLDA HHHHCCCCCHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHH QKALRNNVYSYDERHGYRGRVKELWTKTALEPEEITARLKQTGAFQGMFPAAVLSVNEQT HHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHEECCCHH ATVMNAKGETIELPWDGIKWARKFITNKRQGKAPKLASDVLKPGEQVWIRNNGNFWQLSQ HEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCEEEEEC VPLVASALVSLDPHDGAIRTLVGGFSFYTSQYNRVTQAKRQLGSNIKPFIYSAALEKGYT CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCE LATLINNAPINKPDTRQGTAWRPKNSPDVYGGPTRLRVGLAQSINVMSVRAMRYAGLDAT EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHHHCCCHHHHHHHHHCCCCHH IAELVKFGFDPADLPRNESIALGSPSVTPLQVVTAFSVFANGGYLVEPYFIERVETASGD HHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCC IVEQANPTLACKPVVTEPVINDDPFAAMANELQASTTPLENLSAVNAIHQCGDADSRYAP CHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC QIISEQTAFLVTESLKSVIWGGGNWSKGTGWNGTAWRAARVVKRRDIAGKTGTTNESRDT HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC WFSGFNPKLATTVWVGFDDHSQELGRTSWNANGAKDQISLAEAGAKTAGPGWNEFMKDAL HHCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH AGTPEVPMAPPEGIVSARIDLATGKLTRKTDHTSRFEYFIAGTEPTEYVTEQEDNSDIFI CCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEE DEPDEDLFQ ECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]