Click here to switch to the map view.

The map label for this gene is yrbD [C]

Identifier: 157826201

GI number: 157826201

Start: 1047456

End: 1047905

Strand: Direct

Name: yrbD [C]

Synonym: A1C_05890

Alternate gene names: 157826201

Gene position: 1047456-1047905 (Clockwise)

Preceding gene: 157826200

Following gene: 157826202

Centisome position: 85.09

GC content: 30.0

Gene sequence:

>450_bases
ATGAAACAGAACATTATTGAAACAATTATAGGCTGTATAGTATTAATTATTGCTTTGCTATTTTTAATTTTTGCCTACAA
CACAGGTAGTTCTATAACGAACTCAAAAGGTTATCAGGTAACTGTTAATTTTCAGAGTGCAGAGGGTATAGCAGTTGGAA
GCGACGTAATGATCTCAGGTATAAAAATAGGTATTGTAAAGAAAATTACTTTAGATCCGAAGAGCTTTTATGCAAGTGTA
TATCTAAATATTAATGATGATGTTAAAATACCTAAAGATTCTAAAGCCCAAGTAGTCACCAGAGGGTTACTTGGAGGTAA
ATATATTTCAATTGTACCTGGTAATGATGATGAAAATTTAGCGGCGAATGAAGAGATAAGATATACTCAATCAGCAATTA
ATATTGAATCATTAATTAATAAAATTTTTTCTTCATTTGGTAGTAAGTAG

Upstream 100 bases:

>100_bases
CAAATCTTAAATATAGTAGATGGCAACCGTAATTAATTAGTATACTTAGATAGAACTTCGTATACAATTCTTCCTTTATC
ATGGGTATAGTAAAAAAACA

Downstream 100 bases:

>100_bases
AGTTTTGTTACATTGCTCGTTTTACGTCATTCCCGCGAGAGCGGGAATCCAGAAAAAAATGTATAAATACAGAAAATTTT
TGAAATTAAAATCTCGTTTT

Product: ABC transporter substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKQNIIETIIGCIVLIIALLFLIFAYNTGSSITNSKGYQVTVNFQSAEGIAVGSDVMISGIKIGIVKKITLDPKSFYASV
YLNINDDVKIPKDSKAQVVTRGLLGGKYISIVPGNDDENLAANEEIRYTQSAINIESLINKIFSSFGSK

Sequences:

>Translated_149_residues
MKQNIIETIIGCIVLIIALLFLIFAYNTGSSITNSKGYQVTVNFQSAEGIAVGSDVMISGIKIGIVKKITLDPKSFYASV
YLNINDDVKIPKDSKAQVVTRGLLGGKYISIVPGNDDENLAANEEIRYTQSAINIESLINKIFSSFGSK
>Mature_149_residues
MKQNIIETIIGCIVLIIALLFLIFAYNTGSSITNSKGYQVTVNFQSAEGIAVGSDVMISGIKIGIVKKITLDPKSFYASV
YLNINDDVKIPKDSKAQVVTRGLLGGKYISIVPGNDDENLAANEEIRYTQSAINIESLINKIFSSFGSK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16140; Mature: 16140

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNIIETIIGCIVLIIALLFLIFAYNTGSSITNSKGYQVTVNFQSAEGIAVGSDVMISG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEECCCEEECC
IKIGIVKKITLDPKSFYASVYLNINDDVKIPKDSKAQVVTRGLLGGKYISIVPGNDDENL
EEEEEEEEEEECHHHEEEEEEEEECCCEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCC
AANEEIRYTQSAINIESLINKIFSSFGSK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQNIIETIIGCIVLIIALLFLIFAYNTGSSITNSKGYQVTVNFQSAEGIAVGSDVMISG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEECCCEEECC
IKIGIVKKITLDPKSFYASVYLNINDDVKIPKDSKAQVVTRGLLGGKYISIVPGNDDENL
EEEEEEEEEEECHHHEEEEEEEEECCCEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCC
AANEEIRYTQSAINIESLINKIFSSFGSK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]