| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
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The map label for this gene is fni [H]
Identifier: 157825899
GI number: 157825899
Start: 754941
End: 755969
Strand: Reverse
Name: fni [H]
Synonym: A1C_04195
Alternate gene names: 157825899
Gene position: 755969-754941 (Counterclockwise)
Preceding gene: 157825903
Following gene: 157825894
Centisome position: 61.41
GC content: 39.36
Gene sequence:
>1029_bases ATGCCGAAAGATCAGAATTTAGATATAGCAAGAAAGCAAGACCATATTGAAATTAATCTTACAAAAAACGTTGAATCTAC ACTTAAAAGCGGTTTTGAATCTATTCAATTTATTCACAACGCATTACCGGAAATTAACTATGATATCATAGATACTAGTA CTACTTTCCTCGGAAAATACCTACAAGCACCTATTCTAATTTCTAGTATGACCGGAGGAACGGCGAGAGCGCGCGATATT AACTATAGGCTTGCACAAGTCGCCCAAAAAGCCGGAATTGCTATGGGGCTTGGCTCTATGCGGGTTTTGTTAACGAAGCC GGATACGATTACGACATTTGCCATAAGGCATATTGCTCCCGATATCCCATTACTAGCCAATATCGGAGCAGTGCAGCTTA ATTATGGAGTAACACCAAAAGAATGTCAGTATTTAGTTGATGTCGTTAAAGCTGATGCCTTAATTTTACACTTAAACGTG TTACAGGAATTGACTCAACCGGAAGGTAATAGAAATTGGGAAAATCTTTTACCGAGGATACAAGAATTGGTTAATTACCT CTCTGTCCCTGTAGTCGTTAAAGAAGTAGGATACGGTTTGTCTAAAAAAGTTGCTGAAAGCCTCATAAAGGTAGGTGTTG AGGTTCTTGATATTGCAGGGAGCGGCGGAACATCTTGGAGTCAAGTAGAGGCGTACCGTGCTACAAATTCACTGCAAAAC CGTATAGCTAGTAGTTTTATTAGCTGGGGAATCCCAACTTTAGATTCTCTAAAAATGGTGAGAGAAGTTTCGGGTAACAT TGCGATTATTGCGAGCGGCGGATTAAAGTCCGGCATTGACGGAGCAAAAGCAATTCGTATGGGAGCTAGTATTTTTGGAC TTGCTGGTCAATTATTAAAAGCGGCAGATATTTCAGAAAACTTAGTGTCCGAAGAGATACAATTGATAATCGAGCAGCTT AAAATTACCATGATATGTACTGGATCACGTACTTTAAAAGATTTAGCAAAAGCAGAGATTAGGTTGTAG
Upstream 100 bases:
>100_bases GAATGACAATAAAATTACCTTGTTTAAGGTAATACTAAATATATTTTGTAAAGCTATGGATATTGATATAGATTAACTGT AAAAAAGAATTAGTGAGAAA
Downstream 100 bases:
>100_bases TAAGATTGACTAAATTATATTTCCCACAGTAATTTAAAAAACTTTTCAGAAATTTGAATTATAGTTTTCCAATCACTAAT AACGTGTGAATGGAATATAC
Product: isopentenyl pyrophosphate isomerase
Products: NA
Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MPKDQNLDIARKQDHIEINLTKNVESTLKSGFESIQFIHNALPEINYDIIDTSTTFLGKYLQAPILISSMTGGTARARDI NYRLAQVAQKAGIAMGLGSMRVLLTKPDTITTFAIRHIAPDIPLLANIGAVQLNYGVTPKECQYLVDVVKADALILHLNV LQELTQPEGNRNWENLLPRIQELVNYLSVPVVVKEVGYGLSKKVAESLIKVGVEVLDIAGSGGTSWSQVEAYRATNSLQN RIASSFISWGIPTLDSLKMVREVSGNIAIIASGGLKSGIDGAKAIRMGASIFGLAGQLLKAADISENLVSEEIQLIIEQL KITMICTGSRTLKDLAKAEIRL
Sequences:
>Translated_342_residues MPKDQNLDIARKQDHIEINLTKNVESTLKSGFESIQFIHNALPEINYDIIDTSTTFLGKYLQAPILISSMTGGTARARDI NYRLAQVAQKAGIAMGLGSMRVLLTKPDTITTFAIRHIAPDIPLLANIGAVQLNYGVTPKECQYLVDVVKADALILHLNV LQELTQPEGNRNWENLLPRIQELVNYLSVPVVVKEVGYGLSKKVAESLIKVGVEVLDIAGSGGTSWSQVEAYRATNSLQN RIASSFISWGIPTLDSLKMVREVSGNIAIIASGGLKSGIDGAKAIRMGASIFGLAGQLLKAADISENLVSEEIQLIIEQL KITMICTGSRTLKDLAKAEIRL >Mature_341_residues PKDQNLDIARKQDHIEINLTKNVESTLKSGFESIQFIHNALPEINYDIIDTSTTFLGKYLQAPILISSMTGGTARARDIN YRLAQVAQKAGIAMGLGSMRVLLTKPDTITTFAIRHIAPDIPLLANIGAVQLNYGVTPKECQYLVDVVKADALILHLNVL QELTQPEGNRNWENLLPRIQELVNYLSVPVVVKEVGYGLSKKVAESLIKVGVEVLDIAGSGGTSWSQVEAYRATNSLQNR IASSFISWGIPTLDSLKMVREVSGNIAIIASGGLKSGIDGAKAIRMGASIFGLAGQLLKAADISENLVSEEIQLIIEQLK ITMICTGSRTLKDLAKAEIRL
Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IPP isomerase type 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000262 - InterPro: IPR011179 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =5.3.3.2 [H]
Molecular weight: Translated: 37134; Mature: 37002
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKDQNLDIARKQDHIEINLTKNVESTLKSGFESIQFIHNALPEINYDIIDTSTTFLGKY CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHH LQAPILISSMTGGTARARDINYRLAQVAQKAGIAMGLGSMRVLLTKPDTITTFAIRHIAP HHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCHHHHHHHHHCC DIPLLANIGAVQLNYGVTPKECQYLVDVVKADALILHLNVLQELTQPEGNRNWENLLPRI CCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH QELVNYLSVPVVVKEVGYGLSKKVAESLIKVGVEVLDIAGSGGTSWSQVEAYRATNSLQN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHH RIASSFISWGIPTLDSLKMVREVSGNIAIIASGGLKSGIDGAKAIRMGASIFGLAGQLLK HHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH AADISENLVSEEIQLIIEQLKITMICTGSRTLKDLAKAEIRL HHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCC >Mature Secondary Structure PKDQNLDIARKQDHIEINLTKNVESTLKSGFESIQFIHNALPEINYDIIDTSTTFLGKY CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHH LQAPILISSMTGGTARARDINYRLAQVAQKAGIAMGLGSMRVLLTKPDTITTFAIRHIAP HHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCHHHHHHHHHCC DIPLLANIGAVQLNYGVTPKECQYLVDVVKADALILHLNVLQELTQPEGNRNWENLLPRI CCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH QELVNYLSVPVVVKEVGYGLSKKVAESLIKVGVEVLDIAGSGGTSWSQVEAYRATNSLQN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHH RIASSFISWGIPTLDSLKMVREVSGNIAIIASGGLKSGIDGAKAIRMGASIFGLAGQLLK HHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH AADISENLVSEEIQLIIEQLKITMICTGSRTLKDLAKAEIRL HHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA