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The map label for this gene is yqxC [H]

Identifier: 157825879

GI number: 157825879

Start: 738643

End: 739386

Strand: Reverse

Name: yqxC [H]

Synonym: A1C_04090

Alternate gene names: 157825879

Gene position: 739386-738643 (Counterclockwise)

Preceding gene: 157825880

Following gene: 157825878

Centisome position: 60.06

GC content: 31.72

Gene sequence:

>744_bases
ATGACTAAAATAAGGCTTGATGAATATTTGCTTCAAAAAGGCTTTGTAACAGATATTACTATAGCACGAAGCTTGATTAT
TCAAGGTAAAGTACATAATAAGCATGAGCAGTTAATTAAGCCTGGGATACAGGTTAATATAAATGATAGCGACATTAAGG
TCAAGCTACCTCAGCATAATTATGTTTCAAGAGGTGCATTAAAGTTAATTGCTGCTTTGGATTATTTTAAAATTGATCCT
GAAAATTTAGTTTGTATTGATATAGGTAGTAGCACAGGCGGTTTTACCGAAGTATTACTTGAGCGTAAAGCAAAATTAAT
TTTTGCTGTAGATGTAGGTTATGGCGAACTTCATCCTAAATTACGTGACAATCCACAAATTAAAGTGCTTGAGAAGACTA
ATGCACGATATTTAAGCGATAAACAAATAACAATAAAGCCTGATTTAATTGTTTGTGATGCCAGTTTTATTAGTTTAACT
ACTATATTGCCGACCTCACTAAGTTTAGCTAAAGAAGATTGTATGCTTATTGCTTTGATAAAACCACAATTTGAGGTTGA
AAAGCATGAAGTAGAGCAGGGAGGAATTATTAAAAATACTTTCTTACATCAAAAAGTATGCGATAAAATCAAAGATTGGC
TTGAACAAGAGCATAATTTTAATATGTTTGATATTATAGAAAGTCCAATACTGGGATCTAAGGGGAATAAGGAGTTTTTA
ATAGCAGGACATTTTAAGCTTTGA

Upstream 100 bases:

>100_bases
TGTCTAATTGCAACTGCAACTTTCAATTAGACAAATTATGTATTTCTTATCTATTTAAATGAACCACTATAACATAAGTT
AAATTCAGATTTAAAAAGTT

Downstream 100 bases:

>100_bases
TAATTAAATAAGAATGACATAAAGTAACACTTAATACTTCATGTTTATGCAATGTCATCTTTTAGATAAAAAAAGAAGAA
GTTAGATGATTTGTGTCCGT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDSDIKVKLPQHNYVSRGALKLIAALDYFKIDP
ENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPQIKVLEKTNARYLSDKQITIKPDLIVCDASFISLT
TILPTSLSLAKEDCMLIALIKPQFEVEKHEVEQGGIIKNTFLHQKVCDKIKDWLEQEHNFNMFDIIESPILGSKGNKEFL
IAGHFKL

Sequences:

>Translated_247_residues
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDSDIKVKLPQHNYVSRGALKLIAALDYFKIDP
ENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPQIKVLEKTNARYLSDKQITIKPDLIVCDASFISLT
TILPTSLSLAKEDCMLIALIKPQFEVEKHEVEQGGIIKNTFLHQKVCDKIKDWLEQEHNFNMFDIIESPILGSKGNKEFL
IAGHFKL
>Mature_246_residues
TKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDSDIKVKLPQHNYVSRGALKLIAALDYFKIDPE
NLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPQIKVLEKTNARYLSDKQITIKPDLIVCDASFISLTT
ILPTSLSLAKEDCMLIALIKPQFEVEKHEVEQGGIIKNTFLHQKVCDKIKDWLEQEHNFNMFDIIESPILGSKGNKEFLI
AGHFKL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27947; Mature: 27816

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDSDIKVKLPQHN
CCEEEHHHHHHHCCCCHHHHHHHHHEEECCCCCCHHHHHCCCCEEEECCCCEEEECCCCC
YVSRGALKLIAALDYFKIDPENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPK
CHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCC
LRDNPQIKVLEKTNARYLSDKQITIKPDLIVCDASFISLTTILPTSLSLAKEDCMLIALI
CCCCCCEEEEECCCCEEECCCEEEECCCEEEECCHHHHHHHHHCCCHHHCCCCEEEEEEE
KPQFEVEKHEVEQGGIIKNTFLHQKVCDKIKDWLEQEHNFNMFDIIESPILGSKGNKEFL
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEE
IAGHFKL
EEEEECC
>Mature Secondary Structure 
TKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDSDIKVKLPQHN
CEEEHHHHHHHCCCCHHHHHHHHHEEECCCCCCHHHHHCCCCEEEECCCCEEEECCCCC
YVSRGALKLIAALDYFKIDPENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPK
CHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCC
LRDNPQIKVLEKTNARYLSDKQITIKPDLIVCDASFISLTTILPTSLSLAKEDCMLIALI
CCCCCCEEEEECCCCEEECCCEEEECCCEEEECCHHHHHHHHHCCCHHHCCCCEEEEEEE
KPQFEVEKHEVEQGGIIKNTFLHQKVCDKIKDWLEQEHNFNMFDIIESPILGSKGNKEFL
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEE
IAGHFKL
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]