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The map label for this gene is rimP

Identifier: 157825876

GI number: 157825876

Start: 736813

End: 737313

Strand: Reverse

Name: rimP

Synonym: A1C_04075

Alternate gene names: 157825876

Gene position: 737313-736813 (Counterclockwise)

Preceding gene: 157825877

Following gene: 157825875

Centisome position: 59.89

GC content: 28.94

Gene sequence:

>501_bases
ATGCAAACTATTGAACAACAAATAACAAACGTAATAGAAAAATCCTTGACTGATATGGGATTTGAGTTAGTGCTTATTAA
GTTTAAAGGTGTTAACCATAAAGTAGTCGAGATATTGATTGATAGCTTAAACGGTGAAAAAATATCTGTGGCAGATTGTA
CTAAAGCAAGTAGTACTATCTCAGCTATTCTAGATGTTGAAGATTTAATAGAAGATGCATATTCTTTAGAGGTAGCATCA
AGCGGTCTTGAACGTCCGTTAGTAAAGTTTGAAAATTATAATAGATTTTTAGGAAGAGAAGTTAAAGTCAAACTTAAAGA
ATTATTGAACGGCAAAACTCGTTATCAGGGTAAAATAATTAAAGCCGAAAATAATAAAGTATATTTAAAATGTGAAGCAC
AAGAAGTACTAATTGATTATGATTTAATTAAAAATGCTAATCTAGTTTTAACTGAAGAAGTATTGAAAAAATTACTAGGT
TCTGTGAAGGTTTCTAATTGA

Upstream 100 bases:

>100_bases
TGCTTATATATTCTAATTAGTGTATTATTGCTACGGATAAGCATTATAAAAATTATAGGTAGGTGGGTTTATCCCACCTT
TTTTGTTATAAACATCAAAT

Downstream 100 bases:

>100_bases
TTATCTATTTTGAGGTATTTTTAAAAAATAACCAAAATTAAATCGTGTAAGAAATTGTCGCAATACCCTAAAGCAATAAG
AGATAATGTATGTCTAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MQTIEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAILDVEDLIEDAYSLEVAS
SGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAENNKVYLKCEAQEVLIDYDLIKNANLVLTEEVLKKLLG
SVKVSN

Sequences:

>Translated_166_residues
MQTIEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAILDVEDLIEDAYSLEVAS
SGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAENNKVYLKCEAQEVLIDYDLIKNANLVLTEEVLKKLLG
SVKVSN
>Mature_166_residues
MQTIEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAILDVEDLIEDAYSLEVAS
SGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAENNKVYLKCEAQEVLIDYDLIKNANLVLTEEVLKKLLG
SVKVSN

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=149, Percent_Identity=39.5973154362416, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_RICAH (A8GNW3)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493596.1
- ProteinModelPortal:   A8GNW3
- SMR:   A8GNW3
- STRING:   A8GNW3
- GeneID:   5644829
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_04075
- NMPDR:   fig|293614.3.peg.764
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   TVQIMAD
- ProtClustDB:   PRK00092
- BioCyc:   RAKA293614:A1C_04075-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 18647; Mature: 18647

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTI
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEHHCCCHHHHH
SAILDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKII
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCHHHHHHHHHHHCCCCCCCEEEE
KAENNKVYLKCEAQEVLIDYDLIKNANLVLTEEVLKKLLGSVKVSN
EECCCEEEEEEEHHHHEEEHHHHCCCCEEEHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQTIEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTI
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEHHCCCHHHHH
SAILDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKII
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCHHHHHHHHHHHCCCCCCCEEEE
KAENNKVYLKCEAQEVLIDYDLIKNANLVLTEEVLKKLLGSVKVSN
EECCCEEEEEEEHHHHEEEHHHHCCCCEEEHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA