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The map label for this gene is 157825157

Identifier: 157825157

GI number: 157825157

Start: 23598

End: 24173

Strand: Reverse

Name: 157825157

Synonym: A1C_00170

Alternate gene names: NA

Gene position: 24173-23598 (Counterclockwise)

Preceding gene: 157825168

Following gene: 157825155

Centisome position: 1.96

GC content: 27.43

Gene sequence:

>576_bases
ATGTATATTATAAAAATTTTTATAGCCTTATCTATGATTACTTGCATACTATTTTTATGTTTATTTTATTCTTCATTAAC
TCCGTCTAAGTTTCAGATTGGTGCAAAAACTAGTAATATAGACGATTCGCCTAAAATTAAGTTTACTCTTATAGATCAAG
TAGGAAAGAAATTTGATAGTACCCATTTGCACGGTCATTTAAGTTTTATTTATTTTGGTACTACCTATTCATTGCATGAC
AATCAAGCACTAAAAAGAGTAGAAGATATTATTAAGATTTTGAAGCAAGAGAGTATTTCAGTACAAGTAGTTTTTATTAC
TCTAGATCCTGAGCATGATACAAGTGAGGTATTAAAAAAATATTTAGAAAAAATAGATGGTAATTTTATAGGTTTAACGG
GGAAAGTAGCAGATATTAAACAATTAGCAGATCAATTTAAGGTCTTCTATGCATCTAAAATACTTGATGTAGAAACAAAC
GAATATGAATTACAACATTCTAATTTTGTGTATTTAATTAGCAGCCATGGAAAATTTTTAAAGCATTATTGCTTAGGCTT
ACCGAAAAATGGTTAA

Upstream 100 bases:

>100_bases
TATAATAAAAGATGATTTTTATTGCATATATGATAAGAATAAGTTTTATTATAAATAAATATTAATAATTACTTAGATTA
TGCGACATAATAAAAACCAA

Downstream 100 bases:

>100_bases
CAGATAACCTTTAAGCATTTCCTATTTGTGCTGAGAAATATATTTCATCAATGCCTAAATGTTTTAATGCACTATGCCAT
TTATCTTCGGGATTATCGGC

Product: Sco2 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSPKIKFTLIDQVGKKFDSTHLHGHLSFIYFGTTYSLHD
NQALKRVEDIIKILKQESISVQVVFITLDPEHDTSEVLKKYLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETN
EYELQHSNFVYLISSHGKFLKHYCLGLPKNG

Sequences:

>Translated_191_residues
MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSPKIKFTLIDQVGKKFDSTHLHGHLSFIYFGTTYSLHD
NQALKRVEDIIKILKQESISVQVVFITLDPEHDTSEVLKKYLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETN
EYELQHSNFVYLISSHGKFLKHYCLGLPKNG
>Mature_191_residues
MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSPKIKFTLIDQVGKKFDSTHLHGHLSFIYFGTTYSLHD
NQALKRVEDIIKILKQESISVQVVFITLDPEHDTSEVLKKYLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETN
EYELQHSNFVYLISSHGKFLKHYCLGLPKNG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=139, Percent_Identity=29.4964028776978, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI281182722, Length=139, Percent_Identity=29.4964028776978, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI281182716, Length=139, Percent_Identity=29.4964028776978, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI153791313, Length=139, Percent_Identity=29.4964028776978, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI4759068, Length=141, Percent_Identity=28.3687943262411, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319498, Length=136, Percent_Identity=36.0294117647059, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319511, Length=136, Percent_Identity=30.8823529411765, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920710, Length=139, Percent_Identity=30.2158273381295, Blast_Score=78, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21808; Mature: 21808

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSPKIKFTLIDQVGKKFDS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEHHHHCCHHCC
THLHGHLSFIYFGTTYSLHDNQALKRVEDIIKILKQESISVQVVFITLDPEHDTSEVLKK
CEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHH
YLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETNEYELQHSNFVYLISSHGKFL
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCEEEEEECCCHHH
KHYCLGLPKNG
HHHHCCCCCCC
>Mature Secondary Structure
MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSPKIKFTLIDQVGKKFDS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEHHHHCCHHCC
THLHGHLSFIYFGTTYSLHDNQALKRVEDIIKILKQESISVQVVFITLDPEHDTSEVLKK
CEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHH
YLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETNEYELQHSNFVYLISSHGKFL
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCEEEEEECCCHHH
KHYCLGLPKNG
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]