Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157376516

GI number:

Start: 4123013

End: 4125127

Strand: Reverse

Name: Not Available

Synonym: Ssed_3384

Alternate gene names: NA

Gene position: NA

Preceding gene: 157376518

Following gene: 157376515

Centisome position: NA

GC content: NA

Gene sequence:

>2115_bases
ATGGTTCACGTGAATCCAATCGTAAAGAGTTTTGAATATGGTCAGCACACAGTCACGCTAGAGACTGGTGTTATTGCACG
TCAAGCCGATGCCGCCGTTTTGGCAAGTATGGGTGATACCACAGTATTGGTTACTGTTGTTGGGAAGAAATTTGAAGAGC
CAGGTCGTGACTTTTTTCCACTAACTGTTAATTACCAGGAAAAGACTTACGCTGCGGGTAAGATCCCTGGTGGTTTTTTC
AAGCGTGAAGGCCGTCCATCTGAAAGCGAAACATTGATTGCCCGCCTTATTGACCGTCCAATCCGTCCACTATTCCCAAA
TGGCTTCAAGAATGAAGTTCAGGTAATTATCACAGTAGTTTCTGTCGATCCTGAAATCAACCCTGATGTTATTTCGATGA
TTGGTACTTCAGCTGCATTGGCTATATCTGGTCTGCCTTTCAATGGCCCACTAGGTGTGGCACGTGTTGGTTATACTGAC
GGCGAATATGTTCTTAACCCGAATGTCAGTCAACTTGTTGATAGTGATCTTGACCTGATTGTTGCCGGTACTCAAGGTGC
TGTCTTGATGGTTGAGTCTGAAGCGGCTGCACTTCCAGAAGAAGTGATGTTAGGTGGTGTTGTTTACGGACACGACCAGC
AGCAAGTTGTTATCAGTGCCATTAACGAGCTAAAAGCTGAAGCAAGCAAGCCTGCATGGGATTGGACAGCTCCAGTTCAA
GACGCAGACCTTGTTGCTAAAATTAAAGATTTAGCCGAGGCCGAGATGGCCGCTGCTTACCAAATTGAAGTTAAGCAAGA
TCGTTACACTCAAGTTGGCGTTGTAAAGTCTGCTGCTAAAGAAGCATTATTGGCTGAAAACCCAGAAGCTGATTTGCGCG
AAATCGACGGCCTTCTTGGTAGCTTAGAGAAGCAAGTAGTACGTAGCCGTATTATTGCCGGCAACCCGCGTATCGATGGT
CGTGAACCTGATATGGTTCGTGGCTTGAACGTGATGGCTGGTGTACTGCCACGTACCCACGGTAGTGCTTTGTTCACTCG
TGGTGAAACTCAGGCACTAGTGACTTGTACTCTAGGTACGGAGCGTGATGCTCAGAAAGTTGACAGCATCATGGGCGAGT
ACACTAACCGCTTTATGCTGCACTATAACTTCCCTCCATATTCTGTTGGTGAAACAGGTTTTGTTGGTTCACCTAAGCGT
CGCGAAATTGGTCACGGTAAGCTAGCATGGCGCGGTATCAATGCCGTTATGCCTTCTGCTGAAGAGTTCCCATACAGCGT
TCGTGTTGTATCTGAAATCACTGAATCAAACGGTTCAAGCTCTATGGCTTCTGTTTGTGGTACTTCACTTGCTCTTATGG
ATGCGGGTGTACCAATTAAGACCTCTGTTGCTGGTATCGCTATGGGTCTGGTTAAAGAAGGTGACGATTTCGTCGTTCTT
TCTGACATCTTGGGTGATGAAGATCATCTTGGTGATATGGACTTTAAAGTTGCTGGTACTCGTGATGGTATTACTGCACT
GCAGATGGATATCAAGATTGAAGGTATCAATAAAGAGATCATGCAGATCGCATTGCAGCAAGCCTATGGCGCACGTGTTC
ATATCCTGAATGTTATGGACCAGGCTATCGGTGAGCACCGTGATGATATCTCTGATCACGCTCCACGTATCACAACGCTT
AAGATTAACCCTGAGAAGATCCGTGACGTGATTGGTAAAGGTGGTGCAACTATCCGCGCACTTACCGAAGAGACGGGTAC
AACTATCGAACTTGAAGATGACGGTACCGTTAAGATCGCATCTGCAAACGGTGATGCAACGAAAGAAGCAATCCGTCGTA
TCGAAGAGATCACTGCAGAAGTTGAAGTCGGTACTATCTACAATGGTAAAGTTGTTCGTATCGTTGATTTCGGTGCGTTC
GTTACTATTCTTCCGGGTAAAGATGGTCTGGTTCATATCTCTCAGATTGCTGAAGAGCGTGTAGCTAACGTATCTGACTA
CCTACAAGTAGGTCAGGAAGTGAAGGTTAAGGTGATGGAAGTCGATCGCCAGGGCCGTGTACGTCTTTCTATGAAAGAAG
CTGCGCCTAAAGCTGAAGCAGCTCCAGCCGAGTAA

Upstream 100 bases:

>100_bases
TAGAGAAAAGTTTCTGCTTTGTCATCACTATGTGCTCTTTATCTATTGATTAGAGATGAAGTATACTTGTCCGCGAAATT
AAGGTAATTAAAATTAAGGA

Downstream 100 bases:

>100_bases
ACCTATCTTGTAAAGATATGTTGAATATGAAAGGGGACCTTAGGGTCTCCTTTTTTATGCCTGAATTTCACTAATCGCTA
ACTGATTGATGAAATAATTA

Product: polynucleotide phosphorylase/polyadenylase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>704_residues
MVHVNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIPGGFF
KREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVISMIGTSAALAISGLPFNGPLGVARVGYTD
GEYVLNPNVSQLVDSDLDLIVAGTQGAVLMVESEAAALPEEVMLGGVVYGHDQQQVVISAINELKAEASKPAWDWTAPVQ
DADLVAKIKDLAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLGSLEKQVVRSRIIAGNPRIDG
REPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKR
REIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAIGEHRDDISDHAPRITTL
KINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASANGDATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAF
VTILPGKDGLVHISQIAEERVANVSDYLQVGQEVKVKVMEVDRQGRVRLSMKEAAPKAEAAPAE

Sequences:
NA

Specific function: NA

COG id: COG1185

COG function: function code J; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA