Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 157376393

GI number:

Start: 3958393

End: 3960501

Strand: Reverse

Name: Not Available

Synonym: Ssed_3261

Alternate gene names: NA

Gene position: NA

Preceding gene: 157376394

Following gene: 157376392

Centisome position: NA

GC content: NA

Gene sequence:

>2109_bases
ATGAACATTATCCGGAATATACCGGAAATGAATAGGTTACCAACAAAGAGTAAGTTAACTAAATACTTTCCCTTCATGAA
GAAGATAGGTTACAAGCTCACGGGGAGTTTCCTTGTGGCTATTCTGTTTGTACTTGCGGTTGGCCTGTTTTTCAATTTGA
AAATGGTTCAGAGTAATTATTCACACCTGATGAATTCAGAGTTTCAAGGCATTTTAGATGCTCATGAGTTTGCAATGAAA
CAGTATGTCACCGCGTCCGAGACCTGGTCCAAGCATTTAGCGGATGAAAATGAGCTTAGAGATATTTTAAGCCGTTCCGA
ACTGTCTGCAGCGAATACAGAACATTTCTTTAAGGAGCATGAGGTTGTTTTCTTCGAGAGCACATTTGTTAATCTTCTCG
ACAACAAGGGAAAGGTGATCTATTGCTCCCATCAATGTGAATATCTCGGGAACTCGTTTTTAGGCGTTGAACTTATCCGG
CAGGTGAGAAGAGCATTAACGACTAAGAGTGCGATTGTCGGAGATAGCGACAAGTTTGCATTTTATGCTGCCAGCCCGGT
ATTTAAAAAGGGCTCGACGACCGAGAGTATAGGCTTTGTCATTGTTGGGAAGATTATCGATGATAATTACCTGTCGAATA
TTCAATTGGGTGATGATGACATTGAGATGGCCATCGTTCGAGACAGGGCGGTAATGGCCTCGACAATAAAAATCGATGGT
GAACCGCTTATCGATATTCCTCTGCCTTATTTGGAATATCTGCAGCTATTAAAGAAAACTGATGCAATCATTGAGATCAC
GTTTTCAAAACAGAAGTATTTTGTAACCGCTAAAAATCTTGTTCAAATGAGTGGGGGGATGCCGGGTTCTATTTTACTGT
TGAAGCCTCGTAAAGAGCTTGAAAGTATCGAGTCTGCACTGTTTTCTCAATATATGTACCTGACGCTCTTGTCTTTAGTG
ATCATAATTGTATTAGGTACAGTCATCACCAGACGCCTTCTATCTCCGGTGATCAATCTAACGAAAGCCTCTATCGAGGT
TGCCAGTGGAAAACAGGGGATAAGGGCCGAAATCCAGAGCAGTGACGAGTTTGCCGTATTGGCCAGAAATTTCAATACCA
TGCTGGTAACCATAGAGGAGCAGCACTGCTTTATCCAAAAGCAAAATGAATCATTGGAGGAGCGGGTCGAGGAGAGAACA
CAAGATCTGCACCTTGTGATGAATGATTTGAAAAAGCTGACCGTTGCCGTTGAGAAAAGCCCTGTTGGCATGCTCATCAC
CGATTCGACGGGAATTATAGAGTACGTCAACCCAATGTTTACAGAGCTGTCCGGCTATTCCAGGGAGGAGGCTGTGGGGC
AAACGCCGCTAATATTACAGTCAGAACATACCAGTGAAGATAAGATTAAACAGCTCTGCCAACAGGTCTCTCAGGGACAT
TCCTGGCGGGGAGAGTTTTTGAATAAGACGAGTCATGAACAGCTGCTGTGGCATAGAGTGTTGATCACGCCAATTACGAA
TGAGGATGGTCTGATATCTCATTACTTAGGGTCGATAGAAGATATTACCGAGAAGAAAGAGAGCGAGGAGAAGCTAATTC
AGCAGGCAACGTTTGATACCTTAACTCAGTTACCTAATCGCTTCTTGGCCGAATACCGCCTGAATCAAACACTCTCAGCC
GCCCAAAGAGACGGCAAGAAAGGTGCCCTGCTGTTCCTCGATTTAGATAACTTTAAAGAGGTGAACGATACTCTGGGGCA
TCATGCCGGGGATGAGCTTTTGAAAAGAGTGGCGACCTTGATGAAGAATGCAGTAAGAAAAGAGGATACCGTTGCTCGCC
TCGGTGGCGATGAGTTTCTGGTGATATTGAATCATATTCAAAAACGTGAGGATGCTGAGTCTGTAGCCGGTAAAATTATC
AAATTGGTCGCACAAGAACCTCTGATTGAAAATTGTTCCATAAAGGTGTCAGCCAGTATCGGAATTGCCGTTTTTCCAGA
TGATGCGACTAAGGCTAAAAAATTGATGCAAAAGGCTGATACAGCCATGTATGTGGCCAAAAAACAGGGAAAGAATCGTT
TCAGTTTTTTTAAGAGTGAAGATGAGTAA

Upstream 100 bases:

>100_bases
GTACCACCTGCTGCTACTGAGGCACTGAATATGCCTAACTCCTGTCAGAATGGGGGGTGTCACGAGGATAAAACATTAGA
GTGGGCTAAGCAGGCCTTCG

Downstream 100 bases:

>100_bases
ATAGTTTAATGAAAAGCATCAAAAATGTACCTAATGTTGAATTTCGAGCGCCTAACATTCAAAAATCAGGAGTCGAAGTT
TTAGATCTCGATATTTTTTA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>702_residues
MNIIRNIPEMNRLPTKSKLTKYFPFMKKIGYKLTGSFLVAILFVLAVGLFFNLKMVQSNYSHLMNSEFQGILDAHEFAMK
QYVTASETWSKHLADENELRDILSRSELSAANTEHFFKEHEVVFFESTFVNLLDNKGKVIYCSHQCEYLGNSFLGVELIR
QVRRALTTKSAIVGDSDKFAFYAASPVFKKGSTTESIGFVIVGKIIDDNYLSNIQLGDDDIEMAIVRDRAVMASTIKIDG
EPLIDIPLPYLEYLQLLKKTDAIIEITFSKQKYFVTAKNLVQMSGGMPGSILLLKPRKELESIESALFSQYMYLTLLSLV
IIIVLGTVITRRLLSPVINLTKASIEVASGKQGIRAEIQSSDEFAVLARNFNTMLVTIEEQHCFIQKQNESLEERVEERT
QDLHLVMNDLKKLTVAVEKSPVGMLITDSTGIIEYVNPMFTELSGYSREEAVGQTPLILQSEHTSEDKIKQLCQQVSQGH
SWRGEFLNKTSHEQLLWHRVLITPITNEDGLISHYLGSIEDITEKKESEEKLIQQATFDTLTQLPNRFLAEYRLNQTLSA
AQRDGKKGALLFLDLDNFKEVNDTLGHHAGDELLKRVATLMKNAVRKEDTVARLGGDEFLVILNHIQKREDAESVAGKII
KLVAQEPLIENCSIKVSASIGIAVFPDDATKAKKLMQKADTAMYVAKKQGKNRFSFFKSEDE

Sequences:
NA

Specific function: NA

COG id: NA

COG function: NA

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA