Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157376076

GI number:

Start: 3558416

End: 3561925

Strand: Reverse

Name: Not Available

Synonym: Ssed_2941

Alternate gene names: NA

Gene position: NA

Preceding gene: 157376077

Following gene: 157376075

Centisome position: NA

GC content: NA

Gene sequence:

>3510_bases
GTGTCTTTTCGACTCAAAACGGTACTCGGTATCGCACTTATCGAGGGCGTTTTATTGCTGCTATTGGTTTATACCAGTGT
CGATTATTTAAGAAGCTCCAACGAGGCTGAAATTGAGAAACGAGCCGACTCTATAGTGACTCTTTTTGCCGCGGCGACCA
AAGATGCGGTGATCAGCACCGATGTTTCGACTCTGCAAGTGTTAGCCAATGAACTGCTGGTAAATACTCAAGTCCTGTAT
GTCAATATCTATGATAAAAACTCACTCTTAGTTCAGGTAGGTGAGATTCAATCAGATGAATCGCAGAATATCCAATCCAG
CCGGGATCAAGGCTTATCTAGTGTCGATGATGGTGTGTTAGATGTCGAAGCCAATATCATGGAGTCAGGTTATGTATTCG
GGCGGATTGAACTCGGTGTTAGCGTGAATGAGTTTGATCAGTTTTTGGTGAGTGCGACAACCCGATTTTTTTCCATTGCC
GGATTGGAGATGCTGTTAGTTGCACTTTTTTCCTGGTTGTTAGGTCACTATTTGACACGTAATCTAAGTGAACTTAAAAC
GGCTTCTAAACGTATTTTAAGCGGTGAGACTGGCATACAGATCCCAGTTACAGCTACCGATGAAATCGGTCAAACAACCC
GTGCATTTAACCGAATGATTGAGAAGGTTGAGAAAAACAGAAGTGATCTTGAGAGTGCCAATACCCGTTTAAGTACCATT
TTAGAGACGGCAGTCGACGGCTTTATTATTGTCGATACCTCTGGAGTTATCACTCAGGTGAACAGTGCGGTTTGTCGTCT
GTTTGAGTATGAGCTTGATGAGCTAATTGGTGAAAATGTTTCGATTTTTATGCCGACACATGAACGGCATATGCATGATG
GTTTCATGTCTCGGTTTATTCAGTCCGCTCGTGATGCCAGAAAAGGAAGAGAACTTACTGCACAAAACAGGAGTGGCGAA
CAATTTCCAATTGAGCTGTCTATCTCACGGATGACCATCGAAAATGAAACTATGTTATTGGGGCTGGTAAAAGACCTGAG
TGACATAAAGCGTAAGGAGGTGGCAGCGCTTCGCACCGAGACTATCTTGTTGGCAACGCTGGAAGCCAGTCAGGATGCGC
TTATCACAATTGATATCACGGGAAGAATTCAAGAGTTTAATGATGCTGCCTGTAAGTTATTCGGGCATAAGCGTGAACAG
GCCTTAGGTGAGCTTCTCGAAGACTTGATTTTTGTCGATATAGAGAAGAAAAACTTTAAACAGGGAATACAGCTATTCAG
GCAAACGGGTGAGGGGCCAGCCATTAAGAAAAGTATCGAGATGATGTCTGTCAAGCGTGATGGCAGCTCATTCCCTGTCG
AGATGAAGATGATCCCGGTACAGCTTGGCGAGGAGATCTTACTGACCGCCTTTGTGCACGATATTTCTAAGAGAATTGAA
TATGAAACTCAGTTAAAGCAGGCCAAAGATCAAGCCGAGTCGGGCAGTAAGGCCAAGTCGCGATTTCTGGCAACCATGAG
TCATGAGATCCGCTCCCCTCTTAATGCGGTATTGGGGAGTGTCGAGCTTATGTTGGACTCAAAATTGAACAAAGAGCAAC
GCATCTATGCCCATACAGCAAAAGAGGCTGGAACCGCGCTACTCAGCACCATTAATGACATTTTAGACTTTTCGAAAATT
GAAGCCGGACAGATGATGTTGGAGAGTGTGAGTTTTTCACCTGCCAAGATAGTGGCTCAAGTGTTGAGAATATTAGCGCC
TAATGCCCATGAGAAGGGCATTAATCTTGCGTGTTTTATCAATCGAAATGTGCCTGAACTTGTCAAAGGAGATCCACAAC
GTTTACGTCAGGTGATACATAACCTGGTTGATAATGCGATAAAGTTTTCTAGTGGAGGTTGTGTTTCGGTAGAGATGTGG
ATCCCCGATAGCCATCACGAAGAGGTGCAGTTGTATTGTGCCGTCACTGATGAGGGCATTGGGGTAAGCATGGCGGCTCA
AAAGAAACTGTTTAAAGAGTTCAGCCAGGTTCACGATCAACATAACACGAACTACAAGGGTAGCGGGCTTGGCTTAGCTA
TCTGCGCTGAGCTGATTGAGATGATGGGAGGGAAAATTGAACTAAGCAGCCGATTGGGGCATGGAAGCTGCTTTAGATTC
GATGTGTTGTTAAGGCTTGAGGAGCGACAATTAACCTCTCTTACTCACTTGCCTGCGCATGCCAGAGTACTATTGGTACA
TCCCGATAAAACCTTTTCTCATCTGGTCAGAAAGCAGTATAGCCAGTATGGCGTGAGTAGCGTTAATGTCAGCCGGGTTA
GCGATATCCTGAGTGCTAAAGAGGTCAAGGGACGCTTTAACTTTATCTTGATCGATGACACCGGTTTATCTGAGTTAAGT
TTAAAGCTAATTAGCCTGTTGAAACGTGACTTTCTATTTGAAGGGGGGGGAATCGCAGTGCTAATTTCAGAGTTAAGGCC
TGAAATGTCCGGCTTAGTGTCAGAGATAGGGCTGGAACAGGTGATAAATAAGCCATTGAGCCGCGAGATGATGCTAGGTT
TACTAAGTGGCGATGACGTTAACCATGAACAGAAGCCTGAAGTGGAACTCTTACTTCCGGAGTTGACACCCAAGAACAGA
TTACTTCTTCTGGCCGAGGATAGTCCATCGAATCAAATCGTTGCCGGGGCTATGCTAACCAAATCTGGTTTCGAAGTTGA
ATATGCAAATAATGGGGTTGAGGCCGTTAATATGGCAGCTCAAAAGAATTATGGTTTGATATTGATGGATATGCGAATGC
CGGAGATGGACGGCGTTGAAGCTACTAAAAATATTCTACTTCATCAACCTGATACCATTATATTAGCCATGACGGCCAAT
GTGCAGCCAGAGGATATTGAAAACTGCCTGTCGGCTGGGATGAAAGATTTTGTGCCTAAGCCCGTTAATAAGATTGATTT
AGTGCGAGTTATCAATAACTGGTTGCCGGAAATTCGTAGCACCGATAGTGACATACTCGAAGGTACAGCTAAACTTAGCA
TGGAAAGTTGTGAAGCTGAGGAGCTCGAATTACACTTGGATAACGACGCTTCAAATGGAGTGGTGATGGAACTTAAAACA
GAAAGTGATAAGTGTGATAATGGCGCAAACTCCGATGAGCTAAGCTTGGAGTCACTATTTGATGAGTCTGTACTTGCTGA
GCTCACCGATGCGTTAGGTGTAGAGTCCATGAAGGGGATGTTTAGTGTCTATCTTCAAGAAACTCACGAAAGATTGGATA
CACTTAACGCTTTAATGCAGACGATGGATTTTACCGAAATAGATAATCAGGCGCATACCTTAAAAAGCAGTTCCGGCAGT
TTTGGCGCTCAGGCTCTGTATGAGGTTGCAAAAAGCCTTGAGAAGAGCGCCCGAGAGCAAGATGAAAAAGACGTTGAGTC
ATATATGACAGAGGTTCAACAAGTAGGGCAACAAACTATTAAGGCCTTCAAAGCACGTTTTGCAGCTTGA

Upstream 100 bases:

>100_bases
ATTGGGATGATGTACGCTCGCTGGGTTTAGGTACGTTTGAAAAACCTTTAGAAAACTCCAGTGACATAGCTGATAAGCCG
TCAGTGAAAGGAGAGCTGTA

Downstream 100 bases:

>100_bases
TGCAGTGGGCGAAAGAAACCGGCCTTTGAATCAGATTATTTGAATTTTTTAGGATGGCGTTAAATATGGAAATTAGTCAG
TCTTTTACCGCTTTACTTGT

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1169_residues
MSFRLKTVLGIALIEGVLLLLLVYTSVDYLRSSNEAEIEKRADSIVTLFAAATKDAVISTDVSTLQVLANELLVNTQVLY
VNIYDKNSLLVQVGEIQSDESQNIQSSRDQGLSSVDDGVLDVEANIMESGYVFGRIELGVSVNEFDQFLVSATTRFFSIA
GLEMLLVALFSWLLGHYLTRNLSELKTASKRILSGETGIQIPVTATDEIGQTTRAFNRMIEKVEKNRSDLESANTRLSTI
LETAVDGFIIVDTSGVITQVNSAVCRLFEYELDELIGENVSIFMPTHERHMHDGFMSRFIQSARDARKGRELTAQNRSGE
QFPIELSISRMTIENETMLLGLVKDLSDIKRKEVAALRTETILLATLEASQDALITIDITGRIQEFNDAACKLFGHKREQ
ALGELLEDLIFVDIEKKNFKQGIQLFRQTGEGPAIKKSIEMMSVKRDGSSFPVEMKMIPVQLGEEILLTAFVHDISKRIE
YETQLKQAKDQAESGSKAKSRFLATMSHEIRSPLNAVLGSVELMLDSKLNKEQRIYAHTAKEAGTALLSTINDILDFSKI
EAGQMMLESVSFSPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKFSSGGCVSVEMW
IPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGLGLAICAELIEMMGGKIELSSRLGHGSCFRF
DVLLRLEERQLTSLTHLPAHARVLLVHPDKTFSHLVRKQYSQYGVSSVNVSRVSDILSAKEVKGRFNFILIDDTGLSELS
LKLISLLKRDFLFEGGGIAVLISELRPEMSGLVSEIGLEQVINKPLSREMMLGLLSGDDVNHEQKPEVELLLPELTPKNR
LLLLAEDSPSNQIVAGAMLTKSGFEVEYANNGVEAVNMAAQKNYGLILMDMRMPEMDGVEATKNILLHQPDTIILAMTAN
VQPEDIENCLSAGMKDFVPKPVNKIDLVRVINNWLPEIRSTDSDILEGTAKLSMESCEAEELELHLDNDASNGVVMELKT
ESDKCDNGANSDELSLESLFDESVLAELTDALGVESMKGMFSVYLQETHERLDTLNALMQTMDFTEIDNQAHTLKSSSGS
FGAQALYEVAKSLEKSAREQDEKDVESYMTEVQQVGQQTIKAFKARFAA

Sequences:
NA

Specific function: NA

COG id: NA

COG function: NA

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA