Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157375964

GI number:

Start: 3419126

End: 3420385

Strand: Reverse

Name: Not Available

Synonym: Ssed_2829

Alternate gene names: NA

Gene position: NA

Preceding gene: 157375965

Following gene: 157375962

Centisome position: NA

GC content: NA

Gene sequence:

>1260_bases
ATGAGTCAGCTGCTCTCTTTCTGGGTTGGCTGGCGCTTTTATCTGGCTCGCCAGTCTAATCGATTCATCAGTTTTATCTC
CTTTGCTTCGACAGCGGGTATCGCCTTAGGCGTTGCGGTGTTGATTATCGTGCTCTCTGCGATGAACGGTTTTGAGAGTG
AACTCGAAACAAGGTTACTCGGTGTAGTTGCACACGCCGAGTTGAGCGGCGTCAATGAGCCGATACATAGTTGGCAAGCT
ATCGCTGATGATGCTAATAAGATCCCCGGCATTGTGGCGGCGGCCCCCTTTATACGACTTCAAGGCTTGGTTCAGAAGCC
GGGAGGGTTTCAAGGATTAAGCATTCTGGGAATCGATACCATCGAAGAGGCGAAGGTATCAAAAATTTCTGAATTTATGT
CGACATCGACATGGTCCAAATTGGCTCAACATGATGCGAATAATATTGTATTAGGCAAGAGTCTGGCCGAATCTTTAGGG
TTAGATGTCGGCGACGCCCTAAGTTTATATATGCCTGATATCAGTGGTAAAAACAGAAGCGGCTCTCGAATTGGTGCAGC
AAAAAGTTATCGATTTACCGTTGCAGGCGTGTTTGAACTCGGTGGGTCATTGGATCTCACCACCGCCTATATTCCTATGC
AATATGCCGCTTCAATACTGAAAATGGGCGACGATGTATCAGGTGTCAGAATCAAAACACAGCAGGTATTCGATGCGCCA
AGATTGATCAGAGAACTGGGTTACAGCCAGGAGCAATACCTCTACCTCAATGATTGGACCCGTACTCAGGGAAATCTGTA
TCAGGATATTCAGCTGGTGCGCGGCGTTATGTATCTGGTACTGGCGCTCGTAATCGCGGTTGCCTGTTTTAATATCGTAT
CGACCTTAGTGATGGCCGTGCGTGATAAGCAGTCTGAAATTGCCATCTTGCTCACTATGGGGATGAAGCGTATTTCAATC
ATGAATATCTTTATCGTGCAGGGAGCGCTGAATGGTCTTTTAGGCTGTGTTATCGGTGGAGGGCTTGGTGCCATTATTGC
TGAAAATCTCAGCGTTATCGCCAAGGCAATCGAAGATGTTTTGGGCATTCAGTTGCTATCTGCAGATGTCTATTTTATCG
ATTTTCTGCCTTCACAGCTGCATCTGTCAGATGTGACTTTAGTGATATTACTGGCCTTCATCATGAGTCTCATCGCGACA
CTCTATCCTGCCTGGAAAGCCAGTCAAACCGCTCCAGCACGCGCATTAGCGGGCAGATAG

Upstream 100 bases:

>100_bases
CTTTTGTGGTGGTGACTCATGATACCAAGCTTGCAGCGCGGATGGACAGGCAGGTCCAGATGAAGGATGGTGTTTTGCTC
AACGGTGAAGGAATATCTTC

Downstream 100 bases:

>100_bases
ATCACGGCATAGAAGATTGATAATTCGGGGCGTCACATCTGTGTGATGCTCCCGCATTCCTCTCCCCCGCAATATCCTTT
CTTGCTTCTTGCATCTTTAT

Product: LolC/E family lipoprotein releasing system, transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>419_residues
MSQLLSFWVGWRFYLARQSNRFISFISFASTAGIALGVAVLIIVLSAMNGFESELETRLLGVVAHAELSGVNEPIHSWQA
IADDANKIPGIVAAAPFIRLQGLVQKPGGFQGLSILGIDTIEEAKVSKISEFMSTSTWSKLAQHDANNIVLGKSLAESLG
LDVGDALSLYMPDISGKNRSGSRIGAAKSYRFTVAGVFELGGSLDLTTAYIPMQYAASILKMGDDVSGVRIKTQQVFDAP
RLIRELGYSQEQYLYLNDWTRTQGNLYQDIQLVRGVMYLVLALVIAVACFNIVSTLVMAVRDKQSEIAILLTMGMKRISI
MNIFIVQGALNGLLGCVIGGGLGAIIAENLSVIAKAIEDVLGIQLLSADVYFIDFLPSQLHLSDVTLVILLAFIMSLIAT
LYPAWKASQTAPARALAGR

Sequences:
NA

Specific function: NA

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA