Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 157375526

GI number:

Start: 2907329

End: 2909554

Strand: Reverse

Name: Not Available

Synonym: Ssed_2389

Alternate gene names: NA

Gene position: NA

Preceding gene: 157375527

Following gene: 157375525

Centisome position: NA

GC content: NA

Gene sequence:

>2226_bases
ATGAGCCTAAGTTATGAATCAATAATACCCGTTATTCCGAGCCTAACCGATTCTAATGTCAGTATAAAACGCTACGGCGC
CATACTGACCATGCTGTTAGATGGCTCTCCTCTCGAAGAGATTCTTATCGCTCTGGTTCTTCACATTGAAGAGGAGAAGC
TGGGCACGAAAGGCTCTGTACTGCTATTGAGCGATGACGGTAAACGTCTTCTCAATGGTGCGGCTCCAAATCTTCCCGAT
GATTATAATCAAGCGATTCATGGTATTGAGATCGGTGATGGTGTCGGCTCTTGCGGCACTGCGGCATCTACCGGTCAAAG
GGTTATCGTCGAAGATGTCGAGACTCACCCCTTTTGGGAGGTCTTTAAAGCATTGCCTCTGGCAGCGGGTCTTAACGCTT
GTTGGTCTGAGCCTATCAAGGGCAGTCAGGGAAAAGTGCTGGGTACGTTTGCCATGTACTATGACACCATTAAGTCTCCT
ACTGAGAAAGACCTGTTACTCATTTCGGAAGCGGCCAGACTTGCTAGCTTGGCCATCGAGCGAAGCAGGGCGCTTCAGTT
CGAGCGGTTAACGGGAAATATCTTCAACCATCTCCCCTTGGGGCTGGTGATCACCGATCTGCACTGGACTGTTCTGAATG
CCAACCCGGCATTTTATGCGATAACTGAGCTTACTTCGGGCCTTGAAACCAAATTTGACCCGGTACAGTTTTTTAAACGA
TCGGGGGAAGATACACTCGATAGTATGCTTGCCAGCCTGGCTACCAAAGAAGCCTGGCAGGGAGAGCTCGTTGGCACCAG
AGCGTCAGGTGAGAGTTTCTATCTGGAAGTGACAGTGAACATGTTTAAAGAGCGCGGTTCACAAGAGCTATGTTACTCGT
GGTTATTCAGTGATATTACCGAACGTAAACGCGCCTCAGCCCTAATCGATTATCAAGCAAATTATGATTCATTGACGCAA
CTGGCCAACCGTAACTATCTGTTTAAAATTGTTCAAGCCGAAATAGAGTCCGATAGCTTAAGTCCGGGCTTTGGTTTTAT
GTTGATGGATCTTGATAATTTCAAGCAGATCAACGACACCTTAGGCCATGATAAGGGTGATCAACTTCTTGTCGAGGTGG
CAAAACGAATCGAATCCAGTACTAAAGGTAGGGCCTTGGTTGCTCGATTAGGAGGTGATGAATTTGCGCTTTTCCTGCCT
GGTATGGTCAAAGAGAGCGATCTTGTCCGGCAGGCACATGCAATCAATGACTCGGTTGTTTTGCCCTATCTGTTGGGCCA
GGACAAGCGTGTATTAACCAGTATCAGTATCGGTATTGCCAGATTTCCAGAAGATGCCATGAACCTTGAACAGGTACTCA
ATTGTGCCGATCAGGCGATGTATATCTCGAAGAGTGAGGGACGAAACTGTTTTCACTTCTTTACTCAGCAGATGCAACTT
GATGCAGAACTAACGGCCAAACTACATAACGACCTAAAATTTGCACTGGAGACTAATGCATTCGAACTCTACTATCAGCC
GATTGTCTGTCTGGAAGAGAATAAAATAGTTCGAGCAGAGGTGTTATTAAGGTGGAAGCATGAAGGGGCTTTCATCTCCC
CTGAAGTGTTCATCCCCGTCGCCGAAAGCAGTGGATTGATCGTCGAGTTGGGTCACTGGGTTCGTAAAGAAGCCATGGCT
TCTCTGCTGGAGTTTAAGCGTAAAGGGATAGAGATCGGTCTGTCGATCAATGTTTCTATGTACGAGTTTTGGTCCCACGC
TTTACAAGATTGTCTTGTCACCTCGATTAATGATATCGCCGTGGATTTAACCACGGATAGTTTCCCTTTCGATGGTATTA
CTTTGGAGATCACCGAGTCGCTCTTGATGAAGCAGCATCAGCATCTCATCGATGCACTCCAGAAGCTGAGAGATATGGGG
ATAGAAATTGCGGTCGATGATTTTGGTACGGGTTACTCCTCCTTATCTTATTTGAGTCATTTCCCAGTCGATCACATCAA
GATAGATAAATGTTTTATTCAAGAGTCCGGCTCTTCGGTGAAACAACAAGCTTTGGTAAAGGCTATCACCACATTGAGCC
ATGCGCTGGATCTACACGTGATTGCGGAGGGGGTAGAAACTGAAGAGGAGCTTCAGTTTGTTCGATCTGCAGATATCGAG
GCCGTTCAGGGCTATTACTTCTATAAACCTATGCCTAAACAGAACTTGCTGACTTTGCTGGAGTAA

Upstream 100 bases:

>100_bases
TTTAACCTAAATCTCTTATTTACATAGAGTTTATGATTAGTATATCCTAATTGGTGTCGTAGGATTTTTAAGGATAGAAA
TCCGTCATTCAGGGGGCTGT

Downstream 100 bases:

>100_bases
TGCATTTTACCGCGTTAGGCTTGGCATATCTTTCATTAATAATCTTCATAAATACATTATTTTTAAGTGATTTCTTCATT
AATGAAGATTAACTGAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>741_residues
MSLSYESIIPVIPSLTDSNVSIKRYGAILTMLLDGSPLEEILIALVLHIEEEKLGTKGSVLLLSDDGKRLLNGAAPNLPD
DYNQAIHGIEIGDGVGSCGTAASTGQRVIVEDVETHPFWEVFKALPLAAGLNACWSEPIKGSQGKVLGTFAMYYDTIKSP
TEKDLLLISEAARLASLAIERSRALQFERLTGNIFNHLPLGLVITDLHWTVLNANPAFYAITELTSGLETKFDPVQFFKR
SGEDTLDSMLASLATKEAWQGELVGTRASGESFYLEVTVNMFKERGSQELCYSWLFSDITERKRASALIDYQANYDSLTQ
LANRNYLFKIVQAEIESDSLSPGFGFMLMDLDNFKQINDTLGHDKGDQLLVEVAKRIESSTKGRALVARLGGDEFALFLP
GMVKESDLVRQAHAINDSVVLPYLLGQDKRVLTSISIGIARFPEDAMNLEQVLNCADQAMYISKSEGRNCFHFFTQQMQL
DAELTAKLHNDLKFALETNAFELYYQPIVCLEENKIVRAEVLLRWKHEGAFISPEVFIPVAESSGLIVELGHWVRKEAMA
SLLEFKRKGIEIGLSINVSMYEFWSHALQDCLVTSINDIAVDLTTDSFPFDGITLEITESLLMKQHQHLIDALQKLRDMG
IEIAVDDFGTGYSSLSYLSHFPVDHIKIDKCFIQESGSSVKQQALVKAITTLSHALDLHVIAEGVETEEELQFVRSADIE
AVQGYYFYKPMPKQNLLTLLE

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA