Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157375102

GI number:

Start: 2373615

End: 2375639

Strand: Reverse

Name: Not Available

Synonym: Ssed_1965

Alternate gene names: NA

Gene position: NA

Preceding gene: 157375103

Following gene: 157375101

Centisome position: NA

GC content: NA

Gene sequence:

>2025_bases
ATGACACATTCGAGTCAGGAAGAGATCATCTCCCGCCATAGCTTGCTGTGGCTGCTTATCGTTAATATCGCGGTTCTTGC
GCCCCTGTACGATAAACTCACCCCATGGAGCTTGGGAATATGTGGGATCTGTCTTGTCTGGCGCTTTGGGATCTTCATAG
GAAAAGTCGCCAAGCCCCCCAGGTATCTCGTTACGGCTCTGGCAATCGCATCCGCGATTACACTGGCACTCGTCACCTCA
GAGATAGGTTTACTGAACGGACTCATCAACCTGCTTATCTTAGGCTACGCCCTTAAGTATATTGAGATGAGAAACAGGCG
TGATGTCAGAACCGTGGTACTGGTAGGGTATTTTCTTATCGCCATCACCTTCATCGACCAGCAATCCATTTTCTATGCCG
TTAATCTCACCTTTGTCACCGGGATAAACACCTGCGTGTTGGTCAGCCTCTATAGAGAAGATGTGAAATTAAAAGAGACG
GCCCGTATTGGCTTTAAACTTCTTCTGCAGAGCCTGCCTCTGGCTGCCCTACTCTTCCTGGTACTGCCCAGACTTCCTCC
CCTTTGGATGGTGCCACAACAGAAATCCACTCAAACCGGCTTATCAGATGAAGTTAGCTTCGGTGATATTACTGAACTAA
CACGGTCGGCTGCATTGGCATTCAGGGCCGAATTTTCAATGTCCCCACCAAGCAATCAGCAACTCTACTGGCGAGCACTG
GTGATGGAAGACTACGATGGCAGCCGGTGGACGCAAAACTCGAGTATTAAAGATATCGAAGATAATACGCCATTTACGAC
CTCGAGACGGCAACAACCAGAAGGCTCCCCAATACAATACTCAGTGATCGCCGAACCGAGTAATCAACATTGGTTATTTG
GATTGGATGCCGCATTCAGTAGTGATATCGGCATCATCAACCTGCCCGATTACCGTCTATATTCTGCAAGAACTGTCGAT
CAAAAGTTTCAATACCATGTAGACTCCTATCCTCAATATGCAATGGATAAGACGCTAGATCCCACAGTCAGACTGCTTAA
TTTGCGGCTGCCGGATGACATTAATCCCCGTACCTTCGAGTTGGCACAATCCTTTAAGAAAGACTTGCCCGATCCGACAA
CCAGACTCCGCGCCATGATGAGATACTTCACCGAACAACCCTACTTTTATACACTCACGCCTCCCCGGGTTGGGCCGCAA
CAGATTGATGATTTCCTGTTCGAGAATAAAGCCGGTTTCTGTGTGCATTACGCCAGTGCATTCACTTTTATGGCCAGGGC
CTCGGGCCTTCCGGCGCGTTTGGTAACCGGTTATCAAGGCGGCGAATTTAACCAAAGTGCCGGTTACCTGAGTATCTATC
AATACATGGCACATGCCTGGACTGAAGTATGGATTGAGAATAGAGGCTGGGTAAGATATGACCCCACCGCCATGATCGCG
CCAGAGCGAGTACTCGAAGGTTTTGACGCCTATTTTCAAGCACAAGAGAGCTACCTGTTAGACAGCCCATTTAGCCCATT
AAGACTGAGAGAATTTCCGCTTCTCAATGAATTGAGGCTCACGCTGGCAAGTATTGATTACTATTGGAGCGTTTGGGTTC
TGGGCTTTGACTCAAGCAAGCAGGAGCAGATCCTTCAAAAATTATTAGGAGAAGTTACACAGCAAAAAATAGCCATTTTC
ATGCTGGTGAGTATCACCTTTATCGGCCTTGTTATTGCCTATAGCGCGGGTCTGATCCACTTTCACAGAGATAAAGACAG
GGTCGCTTCAACCTACCTTCATATGTGTCATTTACTCGAGAAAAAGGGGGTAATAAGAGATAAACAACAGGGGCCAACAG
ATTTTTGCTCTATCGTGGAGGACGCCTTTCCCGGTATCGCAACCGATTTTAGACGCTTCACTCACTATTATGTGGCACTT
AAATACCAACCCCTCTCCTCACACAGAAGAAAAAAGACAGTCAAACTGTTTTCAAATCAATTCAGAAAGTTGAGATTAAA
AATCTTAAAAGGTAAGACAAGCTAA

Upstream 100 bases:

>100_bases
TTATTAGCCGGAAAAAAATTCCCCCCGCAGAAGGAGATGTACACCGCATACACTGTCTACAGGAGCTTGCCCTGCTTCCC
CAGTTCGTAGGGGGAGACTC

Downstream 100 bases:

>100_bases
TATCGACGATAAAAAGTGACAAAAATGCCAAAAGAATACCCACTAATGAGTATTTATTATTACAGTACTTATTTCCCCCA
AACGAAGCGGCGCGACAACA

Product: transglutaminase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>674_residues
MTHSSQEEIISRHSLLWLLIVNIAVLAPLYDKLTPWSLGICGICLVWRFGIFIGKVAKPPRYLVTALAIASAITLALVTS
EIGLLNGLINLLILGYALKYIEMRNRRDVRTVVLVGYFLIAITFIDQQSIFYAVNLTFVTGINTCVLVSLYREDVKLKET
ARIGFKLLLQSLPLAALLFLVLPRLPPLWMVPQQKSTQTGLSDEVSFGDITELTRSAALAFRAEFSMSPPSNQQLYWRAL
VMEDYDGSRWTQNSSIKDIEDNTPFTTSRRQQPEGSPIQYSVIAEPSNQHWLFGLDAAFSSDIGIINLPDYRLYSARTVD
QKFQYHVDSYPQYAMDKTLDPTVRLLNLRLPDDINPRTFELAQSFKKDLPDPTTRLRAMMRYFTEQPYFYTLTPPRVGPQ
QIDDFLFENKAGFCVHYASAFTFMARASGLPARLVTGYQGGEFNQSAGYLSIYQYMAHAWTEVWIENRGWVRYDPTAMIA
PERVLEGFDAYFQAQESYLLDSPFSPLRLREFPLLNELRLTLASIDYYWSVWVLGFDSSKQEQILQKLLGEVTQQKIAIF
MLVSITFIGLVIAYSAGLIHFHRDKDRVASTYLHMCHLLEKKGVIRDKQQGPTDFCSIVEDAFPGIATDFRRFTHYYVAL
KYQPLSSHRRKKTVKLFSNQFRKLRLKILKGKTS

Sequences:
NA

Specific function: NA

COG id: COG1305

COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA