Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157375075

GI number:

Start: 2328704

End: 2332459

Strand: Reverse

Name: Not Available

Synonym: Ssed_1936

Alternate gene names: NA

Gene position: NA

Preceding gene: 157375076

Following gene: 157375074

Centisome position: NA

GC content: NA

Gene sequence:

>3756_bases
ATGTCATCGACTCATAGAGAAGCTAGCCCCGAAAACAGCCCTGCGCTTAGCCCTAAGGATGGCCCAGACGTGACTAAAGG
CCGCTCTAAGCCCCTCGATACTCTCACCCTGCCCTTTGGCGGTAGCCGCTTAATTGAAGCCAGTGCAGGAACCGGTAAAA
CCTTCACCATCGCCGGTCTGTATGTGCGTCTGTTGCTGGGCCATGAGATAGAAAAGCCACTGAGCTGCGAGCAGATTCTG
GTAGTCACCTTTACCAATGCCGCCACGGGAGAGCTAAGGGATCGAATTCGCCGCAAAATTCAGCTGGCCTACCGCCGCTT
TATCGGCCTGGAAACCGATGATGATCTGATTGAATCTCTCTATCGACTCACGCCCGAGAGTGAACGCCATCTGGCACTTA
AGCGTCTGGATTTAGCCCTCAAGTCACTCGATGAAGCGTCTATCTTTACCATACATGGTTTTTGTCAGCGAATTTTGGCC
GACATGGCGTTCGAGTCATCCCTGCTGTTCGAGTCAGAGTTCACCTTAGATGACAGCGAGTTTCTGCACCACGCCGTGCG
CGACTTCTGGCGTGAGCAGTGCTACCCATTGCCTGAGTATCTGGCCGAGATAATTCAGAAGAAATTTGCCGATCCCGATG
CGCTATCCAAGCAGCTAAGGCCGCTGCTGGGCGCAAGCCAGGCCAGCGCTCAGCCGGTGCCGCAAGAGTTTACAAAACTG
CAGCAAACGCTCACTCAAAGCTTAAGTCGTCTAAAACTTATCTGGCCCCGCGAGCGGGACGCTATCGAGACCTTGCTGCA
TGCTTTACCGCTGAGCGGCGTGAGATTCGGAAAAAAAGCTGACGCTTACCCTAAGCTCGCTATCATGCTCGATGCCATGG
ATAACTGGTGCAAATTCAGCAACAGTTTACCGCCAATGAAGGTGATGGAGAGTCTGTCGCTGAGTGAGCTTAAGCTTAAC
AAGGGGGGCGAAGTGCCCACGCCGGAGCAAGCGCCGGTACTCGATCATATCGAGCGCCTGTGTGCGCTTATCAAAGATTT
TATTCCAAGCTTTCTCTTTTGCGCACGAAACGGTATCTCGGCTCGCTTTGCCCAGCAAAAATCTGAGCGTAACCTGCTGA
CGCCCGACGATCTGCTGATCACCCTGGAACAAGCCCTGCGTCCAAACCAGGAAGAGGTGAGTGGACAAGCAATAAGTCTG
GCCAACACCATAGCCAAACGTTTTCCTGTGGCCCTTATCGATGAATTCCAGGATACAGATCCGCTGCAATTTGCTATCTT
CAACCGGATATACCAACAGCCCTCTGTCGATGCAATGGGCTCTGATGACTCGCTGATAGCCATCGATGAAGCCACAGCAG
GAACCTCATCGAAAAATCTGAGTCTCTTGATGATTGGCGACCCGAAACAGGCGATCTATGCCTTCAGGGGCGCCGATATA
CACACCTATATTCAGGCGCGCGAGCAAACATCCGAGCACTATAATCTCGATACTAATTACCGCTCCAGCCGTAACATGAT
TTTGGCGGTCAATGCCCTGTTTGAGAATCGTGATGATGCCTTTATCAGCCAGGCCATCCCATTTGAATCGGTGCTGCCCT
CCCCCTTTGCCGACAACAAAGTATTAGTCGAGAAATCGACCACTACATCGGCCCTGAAAATTAAACTGCTTAGCGAAGAT
CCCGAAAAAGGCCTCAATAAAACCACCGCCAGAAAGCATTTAGCCGAAGATGCTGCCAGCGAAATCGCACGGCTTCTCAC
CGAATCGCAAGATGGTGAGTGTACGATTAGTGAAAAGCCGCTCAAGGCCAAAGATATCGCGGTGCTGGTACGTGACAGAA
ATGAAGCCGCGGTGATCAAAGAGTCACTGTCGAACAGGCAAATTGGTGCGGTATTCCTTAGCCGGGACAGTGTATTTAAC
ACCCTCGAAGCCCGAGAAATGGCGCTGGTACTGCACGCCTTGGCCACCCCAAAAGATGAGCGCGCCCTGCGTTCGGCCTT
GGCGACCTCCCTGCTCGGTTATAACGCCCTGGCTATTCATGGCTTTAATCAGGATGAGATGGTAAGACAAACCCTGCTGG
AGCAATTTGATGGCCTGCATCATAACTGGCTAAGACGCGGCGTCATGCCCGCACTCTTGAATTTGGCCAACGAAACCAAG
CTTATCGAACGCCTGCTTCAAAGCGAAGATGGTGAGCGCCGTCTGACCGATTTCAGGCACCTTGCCGAGCTGTTACAGCA
AAAGGCCACCGAACTCGATGGGATCAGTGCCCTGGTCAACTGGTACGAGCAAGCCCTTATCGAGAACCATGCCAATGAAG
AGGCGCAGCTCAGACTCGAAAGTGAGCAGAACCTGGTACAGATTGTCACCATACATAAGAGTAAGGGGCTCGAGTATCCT
GTCTGTTTTATCCCCTTCGTCAGCTTAGCCCGGGATAATCGCCGTAAACCTGCGCCTATGCTCTACCATGAAAATAACAA
GCTTGTGTGGGATATAGAGCAGAGCGATGAGGGTTGGGAGCGGCATAAGCGGGAAAATCTCGCCGAGGATCTGCGCCTGT
TGTATGTCGCTATGACTCGCCCCGTCTATCAGTGCTATCTCTATATCGCCAACCACTGCCGCTTCACTAAAAAAGCGGGG
ATCACCAGTCAGCTCCATGAAACCGGTATAGGCTACCTGCTTGGCATAGAAGAAAAAGCCTGCGAGTTTTCGCTTATCGA
AACATCTGCAAAACGTCTGATGAGTGAGGCGATTAGTGTCTGTGAGATGGCGGATGATGTCTCAAGCCAAGTCTTAGAGA
AAATGTCGGATGACCAAGAGTTATTAGCACCTAAGGTGCTTAAACGTCGACTCTACACTCCATGGCGTGTCGGCAGTTAT
TCGGGCCTGGTAAAAGACTTGCCTCATGAGCGGGTGCTGCCGGGGGCGGATGATGAAGCCTTTCCGGAACTCGAGGAGAT
CAAGGATGAGCTTGACCCTCTGCCTTCTCGTTTCACCTTCGAGCGCGGTGCTAATGCAGGTAGCTTTATGCACTTAGTGC
TCGAGCTGATTGACTTTACCCAAGCCGAAAATGGACTCACCGAACAGTTACCTGTCGCCATGGAGAGGTATGGCATCGAT
GAGTCCTGGCTCGACGTGCTGACTCACTGGTATTTGGATCTACTCGATGCGCCCATCGTACAGGATGGCTCACTCAAACT
TGGGCAGTTAACCAATAACCAGAAACTGGTGGAGATGGAATTCTACCTCCCTATCGCGGCGCTAAAGGCCGATAAGCTCA
ATGCATTACTCCAAGAGTATGGCTACAGCGCGGGGCTTAACTTCGAGTCGCTCAAAGGCATGCTCAAAGGCTTTATCGAT
TTGACCTTCGAGCATCAGGGTCAATTTTATATCGCCGATTATAAGTCTAACCATCTGGGCGATGATTTCACCCATTATGG
GCCCGATTCAATGCGCGGCGCGATCCGCAGCCATAGATACGATCTGCAGTACATCATCTATACCCTGGCGTTACACAGAT
ATTTGAGCCTGAGAATGCCTGATTACGATTATGACCGACATATTGGCGGCAGTTATTACCTCTTCCTGCGAGGTATGTCC
GTCGGTGCACCTATGTCTGGGGTTTTCTATGATAAGCCAGCTAAGGGGCTTATCGAGTCACTCGATGCTCTGTTCGACGA
TGAGCAAACTGAATCAGATGCTCCATCAGCCCAAACAGCACAAGCGCAAATAGAACAGACGGAGCTTAAGCTATGA

Upstream 100 bases:

>100_bases
TTTGGACAGGTTGCCATGTCACTGCTAAGCCCGATGCTCAGCCTCTATCACAAAGATAAGCTCAGCGAGCTTGCAAGTTT
CGTCGAAGGAGGCTGTTAAT

Downstream 100 bases:

>100_bases
TCCAGTCAACACAGCCAATCAAAGCCCTGCTGAAAGTCTGGGAGTCTGAGCGATTAATTACACCACTGGACAGACACTTC
GCACTCGAGATGGCTCAGCT

Product: exodeoxyribonuclease V, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1251_residues
MSSTHREASPENSPALSPKDGPDVTKGRSKPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHEIEKPLSCEQIL
VVTFTNAATGELRDRIRRKIQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSLDEASIFTIHGFCQRILA
DMAFESSLLFESEFTLDDSEFLHHAVRDFWREQCYPLPEYLAEIIQKKFADPDALSKQLRPLLGASQASAQPVPQEFTKL
QQTLTQSLSRLKLIWPRERDAIETLLHALPLSGVRFGKKADAYPKLAIMLDAMDNWCKFSNSLPPMKVMESLSLSELKLN
KGGEVPTPEQAPVLDHIERLCALIKDFIPSFLFCARNGISARFAQQKSERNLLTPDDLLITLEQALRPNQEEVSGQAISL
ANTIAKRFPVALIDEFQDTDPLQFAIFNRIYQQPSVDAMGSDDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADI
HTYIQAREQTSEHYNLDTNYRSSRNMILAVNALFENRDDAFISQAIPFESVLPSPFADNKVLVEKSTTTSALKIKLLSED
PEKGLNKTTARKHLAEDAASEIARLLTESQDGECTISEKPLKAKDIAVLVRDRNEAAVIKESLSNRQIGAVFLSRDSVFN
TLEAREMALVLHALATPKDERALRSALATSLLGYNALAIHGFNQDEMVRQTLLEQFDGLHHNWLRRGVMPALLNLANETK
LIERLLQSEDGERRLTDFRHLAELLQQKATELDGISALVNWYEQALIENHANEEAQLRLESEQNLVQIVTIHKSKGLEYP
VCFIPFVSLARDNRRKPAPMLYHENNKLVWDIEQSDEGWERHKRENLAEDLRLLYVAMTRPVYQCYLYIANHCRFTKKAG
ITSQLHETGIGYLLGIEEKACEFSLIETSAKRLMSEAISVCEMADDVSSQVLEKMSDDQELLAPKVLKRRLYTPWRVGSY
SGLVKDLPHERVLPGADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHLVLELIDFTQAENGLTEQLPVAMERYGID
ESWLDVLTHWYLDLLDAPIVQDGSLKLGQLTNNQKLVEMEFYLPIAALKADKLNALLQEYGYSAGLNFESLKGMLKGFID
LTFEHQGQFYIADYKSNHLGDDFTHYGPDSMRGAIRSHRYDLQYIIYTLALHRYLSLRMPDYDYDRHIGGSYYLFLRGMS
VGAPMSGVFYDKPAKGLIESLDALFDDEQTESDAPSAQTAQAQIEQTELKL

Sequences:
NA

Specific function: NA

COG id: COG1074

COG function: function code L; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA