Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157374772

GI number:

Start: 1947752

End: 1952095

Strand: Reverse

Name: Not Available

Synonym: Ssed_1633

Alternate gene names: NA

Gene position: NA

Preceding gene: 157374773

Following gene: 157374771

Centisome position: NA

GC content: NA

Gene sequence:

>4344_bases
ATGCCAAACTCTCTTATGAAAATTATCATCACTCTCCTACTGACCCTCTGCATTTTTGGTCAGGCATTTGCTGTAGAAGA
AAGCATTGAACCAACTCAGCAATTAGCTAACGAACAAGTTAGTAATTTTACCCAAGAAAACCATCGCGCATCAATCCTCC
TCAATTCAGAAACCTATAGTGTTCCAGAAGGGCTATCTCAGAGCACTGTCACCTCTCTTGTAGAAGATGAAGATGGGTAT
GTCTGGATTGGAACACTCAATGGACTCAATCGCTTCGACGGTAAGGAGTTTAAACATTATTTTGCAGATGAAACCTCTGG
CCTTCCCAGCTCCTTCATTAGAAGCTTACTAATTGACAAAAAAGGTAATTTACTGGTAGGAACTGATAAAGGATTAGCTA
TATACAATGATAAAGTGGATAATTTTGTTATTGTCACAACAAATAGTCAACTAGAAGGAAAATCTATATGGTCACTGTTA
ACCGATCATAAAGATATTATTGTAGGTACAGAAAACTCTATAGTTCGTATCAGTAACGATATGAATAACATATCAATATT
ATCAGAATATCCATTTGGAGGCATTAAAAACTTACTTAAGCATAATGGCAGTTACATAGTAAGAACTTATGACGAGAAAG
TTATAAGTATAAAACAAAATGTAGCCACTTTGCTTCCAACAGCATCTAAAGATCTATCAGTTTGGAATGACACTATATAT
TCCACAAATAAAGACGGCCTATTTTCAATAAATAAAAGCGTAAAGAAAATAAATAACATTTCATTCGACAGCATAAGTAG
CAACCATGATAAATTAGTTGCAATAAAAAACAATAACATTTACACCATAAGTAATGATAATTCACATACATATGTAGGTG
AAGTTGATACAACAACTAATAGTTTCAATAGACCAAAAGTCTATATCGGACAGAAGTCAATTTATATCGCAATACAAGGA
AATGGTTTTGTAAAGATTCAAGAACAAGAAAACCTAATTTCCAACATAAACACGGACAAAAATGTTTGGTCAATTAATAA
AATAAGCGATAATTTTTTAGTTTCTTCTGACTCAGAAAATTTAATCCTATATGATAACAACTTTAATACCATCAACTCGT
TCAACACATCGATTACGGGACCTAAATCAGCAATTGTAAAAAATAATGATATCTTTGTAGGTACTTCTAGTGGCTTGCTA
AAGATGGATATTAATGGAAATGGATTGCACTTACTAAACAAAGATAAATTTTTTATTGTTAAGGATGATAAAAGTTCAGA
ATACATATACGCAGGAACTGTAGCCGGTTCAATATTGAAATTCAATACCAATAACTCTACGTCTGAGAAATTTATTATTG
ATCAAGGAAACCCAATATTTGACATCCTTGTTGATGACAATTCTATTTGGATTGCTACTCAAGGCGGGTTAATTAAGAAA
ACTGGTGATATTATTGAGCCTGTTTTCACGGAAGACTTAGTTGGTAGCTTATATCTTGATAATGATGACCTTTACTTCGG
AACAAGGACTGGCATATTCAAATACAATTTAAAAAGCAAAATAATAAGCAATGAACACTCTAATAACAGACCAATATACG
CAATAACAAAATTCAACAACTATATAATTGCTTCTTCTGTTAGCGAGGTAATTATACTAGATTTAAATTCCAAGCTAGAA
TATGCACTAACTACTAATTACGGAAGCCAAATAGAATACAACATCCAGTCAATTGCCAGTCTTAAAAGCCATATCTATAT
TGGTGGAACAAGTGGGGTTAGTAGGTTTTCTATCGATGATTTATTTAATCATATAGAAAATAGAGAAGCTCCAGAAACAG
TAATAGATAAACTATTGATTTTTAATACTCCTCAAGGTATTGGAAATGGTATTTTAAAAAAACAACTAAAAATAACTGAA
TCTATAAAGTTAAAATATTCAGATTATCCATTTACACTTAACTTCCACACACCTGGAGATTCTAGCAGTAAATCACTCTT
CTCCTATCAAATGCTTGGCCTTTCAGATGCTTGGTTAGAATCAAAAGGCATTAATTCTGCTACTTATACAAACCTATCAC
CCGGTGAATATAGCTTCAATGTCTATGCTATAGATCCATTAACACTTAAGAAAGGGGTTACTAAAAGTCTGAAAGTTATA
ATAACCCCGCCTTGGTGGCTCTCAACACAAGCCAAATTTATCTATTTAATGCTAGCTCTGATAATTTCAGGAGCGATAGT
TAAGGCAGTGCTTCGCCGTCGTGAAGTTCAGAACCAGATAGCTAAATCAGAAGAAAGATTAAAGCTATCGCTATGGGGTA
GCGGAGATGAGATGTGGGATTGGGATATAGAAACCGGACAGATATACCGCTCGAACATCTGGGGCTCGCTGGAATTCCCG
AGAGATGGACAACGCTCCGGCGAGAATGGTGAAGAGAGTAATATCCACCCAATGGATCAGGAGCGCGTCAGCAGCGCACT
AAATAATCACTTTTATGGCAAAACCGATCATTTCGAAGCCGCCTACCGGGTAAAAGGCAAATCAGACGAATGGGTATGGA
TCTTAGATAGAGCCAAAATTGTCGAGCGCGATGAAAATGACAATGCGCTTCGAATGACTGGCACGATTAAAAATATTAAT
AACTTTAAGCATGCCGAGGAGCAACTCAGATTATTCGAGAGAGCGATTGCCAATATATCCGAAGGCATGTTCATCCTTGA
TAGCAACTTCCATTTTGTAGAGGTCAATGAGGCCTGCTGTGAACTGTCTATGACATCGAGAGATCAGTTTATCGGTAAAC
AGCTAAATTTCGATCGCTACCCCGAAAGTTATTCAGATCAGATCCGCTCGATTCTGCATCAACAGGGGAGTTGGAGCAAT
GAGGTTGAATCGGCGAAAGGTGATGGCAGCAGTTTTTTGATGGAGCTAACCGTCGATGCTATCTATGACGAGCTTGGCCA
GCTATCCCATTATGTCGGTGTTTTCTCCGATATCTCGAGGCGTAAACAGCAAGAGGAGGAGCTGAGAAAGCTAACCAATA
ACGACTTGCTGACTAACTTACCCAATCGCTCCAGCCTTATGGTGACCTTAGGTAACCTGGTCAAGCGTGACTCTCACCAT
ACACTGATGGTGCTGGACTTAGATAACTTCAAGAAGATCAATGACTCATTAGGCCACCAGGTCGGTGATGAGCTGCTAAT
TAAAGTCGCTAAACGTATCGAAGACACCGTGCCCTTCCATACGAGTATCTATCGCCTGGGCGGAGATGAGTTTGCCATCT
TAGTCGATAACAACCCGGATATCGGCTCCAGCGCCGTTATCGCCAACAAGGTCATAGATGCTTTTGTGAGCCCGTTTGAA
CTAACCTCAGATAAGGTAGTAGTAGGCTTAAGTATAGGCATAGTACTCTATCCGGAAGATGATCAAAACGAGCAAGCGTT
ACTGCGTAAGGCCGATATTGCCATGTACCACGCAAAGTCAGGCGGCGGTAATCGCTATCAGTTCTATTCAGAATCGCTGA
ACCGAAACGCGATTCGACAGCTCGAAGTTGAAAACCTGATCCGCGAAGGCTTGCGTGATGATCTGTTTGAAGTCTACTAC
CAGCCTAAAATTGACCTCAAGTCCGGAAAAATGGCGGGCATGGAAGCGTTAGTGCGTCTTAATCACCCCGAGCAGGGACT
GATCCCCCCGAGTGAGTTCATTCCTCTGGCCGAGGAGAATGGCTTAATCGTTGAAATTGGGGACTTAGTGATGAAGAAAG
CCTGCTTCGCGGCACAAAAATGGCGGAGTCAAGGAATCTTCGATGGACGCGTTGCCGTCAATTTATCTTCATATCAGTTC
GCTCTTCCCGACCTTCAACAGCGAATAGAGTCAATTTTACGTCTAACTCAGCTACCCGCAGCCAATTTGGAGCTGGAAAT
TACCGAAGGGACCGTCATAAAACAGCCGGAGAAGGCCATCAAGGTGATGCAGCAGCTCGCTAAGATGGGGGTTAGCCTGG
CGTTAGATGATTTTGGTACCGGTTACTCTTCACTTTCTTACTTGAAACGCTTTCCGATCCATACGCTGAAGATAGATAAG
GCTTTTGTCGATGATATAGACAAATCAGACAGAGACCTCAAGATGGTCGACTCGATCATCACTATCGCACACAACATGGG
CCTCTCGGTTGTCGGTGAAGGGGTGGAAGACGCTTCACAGCTAAGCATTTTAAAGGCGTTAAAATGCGAAGAAATACAAG
GATTTATATTTAGCAGGGCTGTAACTGAATCGCAGTTCACCACGCTGTTACACAAAGAATTTATCGAGCCTGACTTAGTA
CAAAAGAGCTCGAAAGCAATGTAA

Upstream 100 bases:

>100_bases
CTAAAAAGCCTTCAAATTTTGACAAACTGTTCACTTTCTGAAAAAGTGAGGTTAAACATCTGTTGCCTAAGCATTACTGG
CTAATAATCAAACTAAAAAG

Downstream 100 bases:

>100_bases
GATAACATTTACCCAATAAAATCCGCGAGAAAAACAAAAGCTGGCATAACAACTGCAACAACTCTCTCAAGTGTCAAAAA
AAATGACATACCTACTAACT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1447_residues
MPNSLMKIIITLLLTLCIFGQAFAVEESIEPTQQLANEQVSNFTQENHRASILLNSETYSVPEGLSQSTVTSLVEDEDGY
VWIGTLNGLNRFDGKEFKHYFADETSGLPSSFIRSLLIDKKGNLLVGTDKGLAIYNDKVDNFVIVTTNSQLEGKSIWSLL
TDHKDIIVGTENSIVRISNDMNNISILSEYPFGGIKNLLKHNGSYIVRTYDEKVISIKQNVATLLPTASKDLSVWNDTIY
STNKDGLFSINKSVKKINNISFDSISSNHDKLVAIKNNNIYTISNDNSHTYVGEVDTTTNSFNRPKVYIGQKSIYIAIQG
NGFVKIQEQENLISNINTDKNVWSINKISDNFLVSSDSENLILYDNNFNTINSFNTSITGPKSAIVKNNDIFVGTSSGLL
KMDINGNGLHLLNKDKFFIVKDDKSSEYIYAGTVAGSILKFNTNNSTSEKFIIDQGNPIFDILVDDNSIWIATQGGLIKK
TGDIIEPVFTEDLVGSLYLDNDDLYFGTRTGIFKYNLKSKIISNEHSNNRPIYAITKFNNYIIASSVSEVIILDLNSKLE
YALTTNYGSQIEYNIQSIASLKSHIYIGGTSGVSRFSIDDLFNHIENREAPETVIDKLLIFNTPQGIGNGILKKQLKITE
SIKLKYSDYPFTLNFHTPGDSSSKSLFSYQMLGLSDAWLESKGINSATYTNLSPGEYSFNVYAIDPLTLKKGVTKSLKVI
ITPPWWLSTQAKFIYLMLALIISGAIVKAVLRRREVQNQIAKSEERLKLSLWGSGDEMWDWDIETGQIYRSNIWGSLEFP
RDGQRSGENGEESNIHPMDQERVSSALNNHFYGKTDHFEAAYRVKGKSDEWVWILDRAKIVERDENDNALRMTGTIKNIN
NFKHAEEQLRLFERAIANISEGMFILDSNFHFVEVNEACCELSMTSRDQFIGKQLNFDRYPESYSDQIRSILHQQGSWSN
EVESAKGDGSSFLMELTVDAIYDELGQLSHYVGVFSDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKRDSHH
TLMVLDLDNFKKINDSLGHQVGDELLIKVAKRIEDTVPFHTSIYRLGGDEFAILVDNNPDIGSSAVIANKVIDAFVSPFE
LTSDKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYSESLNRNAIRQLEVENLIREGLRDDLFEVYY
QPKIDLKSGKMAGMEALVRLNHPEQGLIPPSEFIPLAEENGLIVEIGDLVMKKACFAAQKWRSQGIFDGRVAVNLSSYQF
ALPDLQQRIESILRLTQLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDK
AFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILKALKCEEIQGFIFSRAVTESQFTTLLHKEFIEPDLV
QKSSKAM

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA