Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157373925

GI number:

Start: 930763

End: 933963

Strand: Reverse

Name: Not Available

Synonym: Ssed_0786

Alternate gene names: NA

Gene position: NA

Preceding gene: 157373926

Following gene: 157373924

Centisome position: NA

GC content: NA

Gene sequence:

>3201_bases
ATGCGACTAATTTTACTGCTCTTAGTATTCACCTTAATCCCCTTTGCCAATGCCAGTTCACCTCTTGGGCTTGATAAACG
TCTGGGGATAAATCAAACCACAGTTAAAAATCTTTCGGTTGAAGAAAAACTTGCACATTTAACACGTGCGACCGAAGAGC
AGAAGTTGCTTGAACAGAGCTATCAAGAGACGATTGATAACTATCAGACTCATAAGCTCAGTATTGAACATCAACTTATT
CAAGCTCAACCCCCTCTCTCTTTGTCACAAAATCAGGGATTAACTCAACAAGCCTCTCTCGCTTATCTGAGGCTCTCGGA
GTTAAAAGAGACAGAAGCCAACCTCAATGGGAAAATAACGGACTTAATTAAGCAGCATAACCAGTTGCCGAACAAGATAA
GTTCGGCCAGACAAATTCTCTCGCATAGCAAGAAACAAACTATTAGTCAACCACCTAGCGGAGAGGAACTTGTACTTCAG
GCACAACGTCAGCTCTATGTTCAAACCTTAGCGACACTCGAAGCAGAACTTGCCAGCAGTCAAAAACGCATAGACCTCAA
TCAGAAACAGGTGTTACTGGTAAGAAAACAGCTATCCCAACAGGAAAACCTGATTGAATCGCTCAATAGCGCTGTGGCCC
TGCAACGCCAAAAAAGAACCGATGCTACAATCGCTAAGAGTCTGATTGAAACCTCGACGGACAAAGACCCTCTCACACAA
GAGCTAAGCTCAATAAATCAAAACTACGCCTCAGATTTAAAGAGTCTGACAAACAAAACCAACCAAGTGGTAAAGCAGCA
AGAGGTGGCTGAAAACAGATATCAACAGCAAGCCAAGCAGCTGGCCAATATTCAACAACAGATAGGATGGATTAAGCTCA
ACTCGGCTTTTGGCGAACGCTTTCTGCAGATGCTGCAAACATTACCGAATCCGCCAAACCAGGAAAAACTACAAAACAAA
ATTGCCAATGCAAGAATGGCGAGATATCAACTCGAACAAGATCAAACCCTCAACGGACAGCAGCTAATAGCTCAAGATTC
ATTCACAAGCATACAGAATAAATTACTCGACTCTCAGCATGCGTTAATCACTCAGCTATTACAGAGCTATGATCTATACC
TGAGTGAACTGGGTGACTTAAGAGTCATCTACGAGCAGTTAACCCAACAGCATTTAACCTTAAAAAGTACCCTGAACGAA
CACCTGTTTTGGGTTCCAAATGCAAACTCTATCGGGCAACTCTGGTTCACCGAGTTCTACCAGAGCACACAATGGCTGAT
TCATCAGGCTCCCTCCATCGATCTATCAAACTCCTTCAGTGAGCGAAGTGGTTTCTGGTCCTGGTGGATTATACTCTTTG
TTCTCAGTCTTGTGGCCCAGGATATTCTGACACCTAAGTTTAAAGCCGCCATGGCCCAGGATGTAACGTTCGTAGGGAAT
GTTACCCAAGATCAATTTGTTTATACCTACAGAGCCCTTATCAATTCGCTGGCGTACAGCATCATCAAGCCACTGCCCGT
CATCACCGCGGGCTTAATCATGTACGACTCCAGCCAAAATATGGTTTCAGCCATAGGCATGGGCGTACTCGCCATTGGGC
TACTCTACCTGCTCTATCGTTTTACTTACCTGCTGGCACTCGATCGCGGCCTGTTGATCAGCCACTTCAAGGGGGAAAAA
GAGATCATCCGCGAGGGTCAGCTCAGGTTTAAGACATTCACATTAATGGCCATTCCTTTCTTCGGCATCATGGGGTTTAC
TGAGTTCATCGATAACTCTGTGTTACGAAACAGCATAGGAAGAGGCGCATTTATTATCTTCTGTATCATGTTGCTTTGGT
TCTACAAAGATATTCTGGCACTGTCGAAGAGAGAACATCATTACCATCAGGATGGTAAAAATAAGAAGCTTATTCAACGT
ATCTTATGGACCATTCTTCTAGTCGTTCCCCCCATGTGTGCGGTGCTTGCATTCAGAGGTTACTACTACACCGCCTTTCA
GATGCTATTACAGTTGCAGTTATCCCTGCTGCTCTCATTAGGGTTTATGCTGCTCTATCAGTTGATAAAGCGCTGGATGT
TGATTGAGCGACGCAGAATAGCCTTCGATCGGGCAAAAGCCCGAAGAGCCGAGATCCTCTCGCAACGTGAACGGGGTGAA
GACCCTCAAAACACCAATGACGCTCTCGATACGTATGAAGAGCCCGTGGTCGACTTAGAAACTATCTCCAGCCAGTCTCT
GGGCTTAGTGCGCTCATTGCTGCTGCTGGCCTTTCTCGTCTGTTTAATCGGCCTGTGGACCCAGACTCACACGGCTCTGT
TCTCTCTGCTCGACGGGATCACACTCTGGACCAGTAATTCAATGATAAATGGCATTGAACAGCAGCTGCCAATCACATTA
AAGTCACTGCTGTTAGGGCTTATCATTGTCGGCTTCTCACTGATGATAGCCACCAACTTACCTGGCCTGCTCGAACTAAT
GATATTGCAACGGCTCGATCTAACCCAAGGCACCGGTTTTGCGATAACCACAGTCAGTCGCTACCTGGTGGTTTTCTTCG
GTCTGCTCAGCGGTTTCTCGACCCTTGGGATGGAGTGGTCAAAATTACAATGGCTCGTCGCCGCTCTATCGGTTGGTTTA
GGTTTCGGCCTGCAGGAGATCTTCGCTAACTTTATCTCCGGTTTGATTATTCTTTTTGAAAAACCGGTTCGTATCGGCGA
CACCGTCACCATCAGAGATCTGACAGGAACGGTGAGTAAAATTCAAATTCGAGCCACGACCATTATTGACTGGGACAGAA
AAGAGATTATCGTTCCTAACAAAGCATTTATAACCGAGCAGCTAATCAACTGGTCGCTATCGGATCCGATCACCCGTGTC
ATAGTGTACGTTTCAGTTGCAAGAGACTCAGATCCGGCTCGTGTCGAAGCCGCATTGTATCAAGCGGTAAAGGAGTGTGA
TGACGCCTTGGAGACACCAGAACCTGAGGTCTGGTTTGCCGGTTTTGGCAAACACACTCAAGACTTCGAAGTCAGAGCAT
ACGCAAAAGATATGAACTCACGTTGGCCGCTGCGTCATAAGTTACATAAACGGATCAGTAAAAAGTTAAATGAAAACAAC
CTGGAACTGGCTTATCCGCAACTGGAAGTACATATTAACAATAGCCAAAACAAAGATGCTCAAGGACTTATCAGAACCTA
A

Upstream 100 bases:

>100_bases
TGCTAAGTTCAAATTGATAAAAAAGAGCTTGTACTGCCATACCATTATCTTAATAACTTGGTAATATACCTCTGTTTCTT
CTCTCAACCAGCATCAGACT

Downstream 100 bases:

>100_bases
TGATTATTTTTGCACATCGGGGGGCAAGCGGTTATGCCCCGGAAAATACGCTGGCAGCAATGAAAAAAGCTATCGAGCTT
GGGGCCAGAGCGGTAGAGAT

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1066_residues
MRLILLLLVFTLIPFANASSPLGLDKRLGINQTTVKNLSVEEKLAHLTRATEEQKLLEQSYQETIDNYQTHKLSIEHQLI
QAQPPLSLSQNQGLTQQASLAYLRLSELKETEANLNGKITDLIKQHNQLPNKISSARQILSHSKKQTISQPPSGEELVLQ
AQRQLYVQTLATLEAELASSQKRIDLNQKQVLLVRKQLSQQENLIESLNSAVALQRQKRTDATIAKSLIETSTDKDPLTQ
ELSSINQNYASDLKSLTNKTNQVVKQQEVAENRYQQQAKQLANIQQQIGWIKLNSAFGERFLQMLQTLPNPPNQEKLQNK
IANARMARYQLEQDQTLNGQQLIAQDSFTSIQNKLLDSQHALITQLLQSYDLYLSELGDLRVIYEQLTQQHLTLKSTLNE
HLFWVPNANSIGQLWFTEFYQSTQWLIHQAPSIDLSNSFSERSGFWSWWIILFVLSLVAQDILTPKFKAAMAQDVTFVGN
VTQDQFVYTYRALINSLAYSIIKPLPVITAGLIMYDSSQNMVSAIGMGVLAIGLLYLLYRFTYLLALDRGLLISHFKGEK
EIIREGQLRFKTFTLMAIPFFGIMGFTEFIDNSVLRNSIGRGAFIIFCIMLLWFYKDILALSKREHHYHQDGKNKKLIQR
ILWTILLVVPPMCAVLAFRGYYYTAFQMLLQLQLSLLLSLGFMLLYQLIKRWMLIERRRIAFDRAKARRAEILSQRERGE
DPQNTNDALDTYEEPVVDLETISSQSLGLVRSLLLLAFLVCLIGLWTQTHTALFSLLDGITLWTSNSMINGIEQQLPITL
KSLLLGLIIVGFSLMIATNLPGLLELMILQRLDLTQGTGFAITTVSRYLVVFFGLLSGFSTLGMEWSKLQWLVAALSVGL
GFGLQEIFANFISGLIILFEKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIVPNKAFITEQLINWSLSDPITRV
IVYVSVARDSDPARVEAALYQAVKECDDALETPEPEVWFAGFGKHTQDFEVRAYAKDMNSRWPLRHKLHKRISKKLNENN
LELAYPQLEVHINNSQNKDAQGLIRT

Sequences:
NA

Specific function: NA

COG id: COG3264

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA