Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157373765

GI number:

Start: 753945

End: 756851

Strand: Reverse

Name: Not Available

Synonym: Ssed_0625

Alternate gene names: NA

Gene position: NA

Preceding gene: 157373769

Following gene: 157373764

Centisome position: NA

GC content: NA

Gene sequence:

>2907_bases
ATGCCCTTTTCCTTAGGTCAACGCTGGATAAGTGATACCGAATCTGAACTTGGTTTAGGTACAGTAGTCGCACTGGAAGG
CCGTATGGTCACCCTGATGTTTCCGGCAACGGATGAGAATAGATTGTTCTCACGCACCGATGCTCCCTTAACTCGTGTTA
TTTTTAATCCGGGCGATAAAGCCGAAAGCCACGAAGGCTGGAGCCTGACCGTTAGTGAAGTCGAGGAGAAAGATAACCTC
ATTATCTATCATGGTATTCATAGCGAAACCGGTGAGCAGGCCAGTCTGAGAGAGACCTTGCTTAACCATAATATTCGTTT
CAATAAACCACAAGATAGACTCTTTGCCGGACAAATTGATCGCCTCGAACGTTTCGGCGTCCGCTATCAATGCCAGTTAT
TAAGACACAAGTTAGCAACCTCCGATCTTCTTGGCTTACAGGGCCCAAGAGTCGGTCTGATCCCTCATCAGCAGTGGATT
GCCCATGAAGTCGGACGCCGTTTTGCCCCCCGGGTATTACTGGCCGATGAGGTGGGACTGGGTAAGACGATTGAAGCGGG
TCTGATTATTCATCAGCAACTGCTTACCGGTCGCGCCGAACGTATTCTGGTTATCGTACCCGATACACTACGCCATCAAT
GGCTGGTCGAAATGCTGCGTAGGTTTAACCTCAAATTCTCAGTCTTCGATGAAGATAGATGCATCGAAGCCTATGCCGAT
AATGATAACCCTTTCTATACCGAACAACTGGTTATCTGTTCACTCGAACTTCTGCGTAAGAAAAAACGCTTAGAGCAAGC
CTTGGATGCCGACTGGGATCTGATGGTCGTCGATGAAGCTCATCACCTGGAGTGGACCGAAGATGCGCCTAGCCGTGCAT
ATCGTGTCGTAGAAGCACTCAGTGAAGTCGTCCCCGGCGTTCTCTTGTTGACAGCGACCCCGGATCAATTGGGCCATCAG
AGTCACTTTGCCCGTTTACGTCTGCTGGATCCGGATCGTTTCTACGACTATGAGGCGTTCCTTAAAGAGGAGAGCAGCTA
TAAAGATGTTGCCAGTGCCGCCGACGCCCTGGCCAGCGGAAATAAGCTACCCGACGATGCTATCAATAGCCTTACAGAGT
TACTGTCTGAAAAAGATATCACACCTAGCATTAACGTGATTCAGGCGACAGATATCGATCCCGATCAACAGCAAGATGCC
CGCGATGAACTTTTGCAGGAGCTACTGGACAGACACGGTACCGGCCGCGTCCTGTACCGTAACAGTCGTGCCTCGGTAAA
AGGCTTCCCGACCCGTATCTTCAATGCGTATCCTCAGGCGATGCCATCTCAATATGTCACTGCCGCGCGCGTCGGTGCCA
TGATGAATGGCCATCTCGATACTCAAGGTAAAGTTAAGCAAGCACTGAGTCCCGAAAAAATCTATCAGGATTTTGACAGC
AACAGCGCCAGTTGGTGGAAGTTCGACCCCAGAGTCGACTGGCTCATCAATTTCTTAAAAGAAAACCGCAGAAAGAAAGT
GCTGATCATTGCTAGTCAGGCAGAAACAGCGCTCAGCCTCGAAGAGGCATTGCGTACACGTGAAGGTATTCAGACGACCG
TATTCCATGAAGGTATGTCTATCATTGAACGCGATAAAGCGGGAGCCTACTTTGCCCAAGAAACGGGTGGTGCTCAGGCT
CTTATCTGTAGCGAAATTGGTTCGGAAGGTCGTAACTTCCAGTTCGCCAGCCAGCTTATCCTGTTCGATCTGCCACTTAA
CCCTGATCTGCTCGAGCAACGTATCGGCCGTCTGGACCGTATCGGTCAGAACAATGATGTCGAGATCCACGTACCTTACC
TCGAAAAAACGGCTCAAGAGTGCTTGATGCAGTGGTACCACAAAGGACTCAACGCGTTTGAACAGACTTGTCCGAGTGGA
CATATTCTCTTCAGTGAGTTTGCAGAGCCCTTGTTAGATGTGCTGATTAATCAAAATGATGACTCGCTCACCGAGCTGCT
TAACCATACCCAAACTCGATACAAAGAGTTGAAAACTGTGATGGAGCAAGGTCGGGACAAGCTACTTGAGATTAACTCAC
ATGGTGGCGAACGGGCTAATAAGTTAGTACAGAGCCTGGCCGCTCGTGATGAAGATACTCAGCTTATCGGCTCAGTTATA
CGCTTATGGGATGTTATCGGTGTCGAGCAGGAGGACTGTGGTGAAAACGCTATCGTCTTGAATCCGAGTGAACACATGAT
GTTCCCAACCTATCCGGGTCTTCCCGAAGATGGCATCACAGTCACCTTCGACAGAGAGATGGCATTGTCGCGAGACGATA
TTGCGCTTATCACTCAAGAGCACCCGATAGTGCAGACAGGACTGGATCTGATCACTTCATCTGAGACGGGTACCACCAGT
GTTGCCGTGTTAAAGAACAAGGCATTACCGGCTGGAACCATCTTCCTTGAGCTGATCTACATGGCCGATGCTTCGGCGCC
TAAGTCCAGCCAGTTATACCGTTACCTGCCGCCAACGCCGGTACGTATCTTACTGGATAAGAATGGTAATAACCTGTCTG
ACAATGTGACCTATGAGAGCTTTAACAAGCAGCTCAGTGCGGTTAACCGTCATATAGCCAGCAAGTTAGTCAATGCGTCG
CAGACGATTTTACATCCTCTGTTCGCCAAGGGCGAAGAGTTTGCCGAAGTTGAACTAAAGCTCTTAGCCGATAGTGCCAG
AGCCAAGATGACCTCTCAGCTCACATTGGAGTTAGAGCGTCTCGAAGCCCTTAAAGCGGTGAACCCAAACATCCGTGATG
AGGAGCTTGAGCATATCCGTGAGCAGATGAATGAGCTCAATGGATACCTCGATGGCTGTCTGCTGCAACTCGATGCGATT
CGCTTAGTTCTTGTAAGTCACGCTTAA

Upstream 100 bases:

>100_bases
GATTTTGTTCAAGCGACCGAGCCGTGAGCCTTGCACTTTGAGGGAGTTTGGGTAAAAATACGCGCCCCTCGAGATTCACC
CTGTAGATGAGAAATAAGTA

Downstream 100 bases:

>100_bases
TCAGGTACCAGGCGCTGGGTTCTAGGACCTAGCGCCTAGCTTCTGAATTCTAGGACCTTCTTTTCCAACCTGTTATACTT
GCTCTATCCCAGATTAACAT

Product: ATP-dependent helicase HepA

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>968_residues
MPFSLGQRWISDTESELGLGTVVALEGRMVTLMFPATDENRLFSRTDAPLTRVIFNPGDKAESHEGWSLTVSEVEEKDNL
IIYHGIHSETGEQASLRETLLNHNIRFNKPQDRLFAGQIDRLERFGVRYQCQLLRHKLATSDLLGLQGPRVGLIPHQQWI
AHEVGRRFAPRVLLADEVGLGKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLKFSVFDEDRCIEAYAD
NDNPFYTEQLVICSLELLRKKKRLEQALDADWDLMVVDEAHHLEWTEDAPSRAYRVVEALSEVVPGVLLLTATPDQLGHQ
SHFARLRLLDPDRFYDYEAFLKEESSYKDVASAADALASGNKLPDDAINSLTELLSEKDITPSINVIQATDIDPDQQQDA
RDELLQELLDRHGTGRVLYRNSRASVKGFPTRIFNAYPQAMPSQYVTAARVGAMMNGHLDTQGKVKQALSPEKIYQDFDS
NSASWWKFDPRVDWLINFLKENRRKKVLIIASQAETALSLEEALRTREGIQTTVFHEGMSIIERDKAGAYFAQETGGAQA
LICSEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGRLDRIGQNNDVEIHVPYLEKTAQECLMQWYHKGLNAFEQTCPSG
HILFSEFAEPLLDVLINQNDDSLTELLNHTQTRYKELKTVMEQGRDKLLEINSHGGERANKLVQSLAARDEDTQLIGSVI
RLWDVIGVEQEDCGENAIVLNPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQEHPIVQTGLDLITSSETGTTS
VAVLKNKALPAGTIFLELIYMADASAPKSSQLYRYLPPTPVRILLDKNGNNLSDNVTYESFNKQLSAVNRHIASKLVNAS
QTILHPLFAKGEEFAEVELKLLADSARAKMTSQLTLELERLEALKAVNPNIRDEELEHIREQMNELNGYLDGCLLQLDAI
RLVLVSHA

Sequences:
NA

Specific function: NA

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA