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The map label for this gene is ycaN [H]

Identifier: 157372669

GI number: 157372669

Start: 4908000

End: 4908917

Strand: Reverse

Name: ycaN [H]

Synonym: Spro_4436

Alternate gene names: 157372669

Gene position: 4908917-4908000 (Counterclockwise)

Preceding gene: 157372672

Following gene: 157372667

Centisome position: 90.09

GC content: 57.63

Gene sequence:

>918_bases
ATGCTCGGCCATCTGGAATGTTTTGTCAGCAGCGCAGAGAGCGGCAGTTTTTCCGCCGCCGGCCGCAAGTTGGGGATCAG
TTCTGCCGCAGTGGGAAAGAACGTCACCAAACTGGAGTCGTTGGTGGGCGTGCGACTATTCCAGCGCAATACGCGTAAAT
TGACGCTGACCGAAGAGGGCGAACGTTTTTTGCAGGAGGTCAGCGGCGGCTTGCTGTCGATCCAGTGTGCATTGAAAAGT
TTGAGTAGCAGCGGTGGGGTCGCTGCGGGAACCTTAAAGGTCAGCATGGGTACCGCTTTTGGCCTGCATTTTGTGCTGCC
GATGTTGCCGGACTTTCTGGCACGTTATCCGTCGATTGTTCCAGACTGGCATTTTGATAACCGTCAGGTGGATTTGATTG
GCGAGCATTTCGATGCGGCAATGGGAGGCGGTATCGAACTGGCGCAGGGGATGATCGCCCGCGAACTGGCACCGGCACAC
GGCGTGCTGGTGGCTTCGACGCAGTATTTGCAACAGTACCCATCGCTCCAGCAGCCGGAACAGTTGGTGAGTCATGCGGG
CATTTTTATTCGCTCACCGCAAACCGGGCGAGTCCGCAACCTGCCGCTGCGCAATGCGGATAACGAGCAGCGAGCGCCGA
GCATGACGATAAAAATGACGGTAAACGAGCCGGAAGCGGCGGCACGGGCCGCGGAAATGGGTTTAGGCATTGCGCTGATC
AGCATGCCGAACGCGTTACCTTATCTGGAGAGCGGCCGCCTGGTGCGAGTATTGCCAGGCTGGTATGTCGATCGCGGTAG
TGTGCACCTGTACTTCCCCACCACCAAATTTCTGCCGACCAAAACCCGGGTGTTCGTCGATTACATCACCGAACAATTCC
GCCTGCAGAAGCTGGCGGCTCGGTTTGACGCGCGCTAG

Upstream 100 bases:

>100_bases
AAAGCTACCGGTTCAGTATCGGAGAAACGCGGATCGGTAACTAGCCACAAAGAGCTATAATCAGCTTAAACCATTGGTTT
GAAATCGTCGGAGAAAAATC

Downstream 100 bases:

>100_bases
AAACGTGAAAAGCCCCTTGCGGGGCTTCATTCTTCCGTCAGTTTACTGTCTGACGATCAGTTGAAGATTTCTGCGGTGCC
GTACAGTTTGTTCTGGCCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEGERFLQEVSGGLLSIQCALKS
LSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIVPDWHFDNRQVDLIGEHFDAAMGGGIELAQGMIARELAPAH
GVLVASTQYLQQYPSLQQPEQLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALI
SMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKLAARFDAR

Sequences:

>Translated_305_residues
MLGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEGERFLQEVSGGLLSIQCALKS
LSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIVPDWHFDNRQVDLIGEHFDAAMGGGIELAQGMIARELAPAH
GVLVASTQYLQQYPSLQQPEQLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALI
SMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKLAARFDAR
>Mature_305_residues
MLGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEGERFLQEVSGGLLSIQCALKS
LSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIVPDWHFDNRQVDLIGEHFDAAMGGGIELAQGMIARELAPAH
GVLVASTQYLQQYPSLQQPEQLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALI
SMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKLAARFDAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=27.9151943462898, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=28.3783783783784, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=26.6666666666667, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=28.8590604026846, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=29.020979020979, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=27.5261324041812, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789639, Length=302, Percent_Identity=24.1721854304636, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789173, Length=304, Percent_Identity=27.6315789473684, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=33.6206896551724, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786448, Length=118, Percent_Identity=33.8983050847458, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=118, Percent_Identity=31.3559322033898, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33274; Mature: 33274

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEG
CCCCHHHHHCCCCCCCCHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
ERFLQEVSGGLLSIQCALKSLSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIV
HHHHHHHCCCEEEEHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
PDWHFDNRQVDLIGEHFDAAMGGGIELAQGMIARELAPAHGVLVASTQYLQQYPSLQQPE
CCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHH
QLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALI
HHHHHCCEEEECCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEE
SMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKLAA
ECCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
RFDAR
HHCCC
>Mature Secondary Structure
MLGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEG
CCCCHHHHHCCCCCCCCHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
ERFLQEVSGGLLSIQCALKSLSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIV
HHHHHHHCCCEEEEHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
PDWHFDNRQVDLIGEHFDAAMGGGIELAQGMIARELAPAHGVLVASTQYLQQYPSLQQPE
CCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHH
QLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALI
HHHHHCCEEEECCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEE
SMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKLAA
ECCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
RFDAR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]