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The map label for this gene is rpoD [H]

Identifier: 157372533

GI number: 157372533

Start: 4766903

End: 4768846

Strand: Direct

Name: rpoD [H]

Synonym: Spro_4300

Alternate gene names: 157372533

Gene position: 4766903-4768846 (Clockwise)

Preceding gene: 157372532

Following gene: 157372536

Centisome position: 87.48

GC content: 54.17

Gene sequence:

>1944_bases
ATGCCGCCACAGTGGGCCGCGGCAACAACAAAAACGCCCCAAATGCTATTGTTGGCGGTTTCGCCGACCGACACCAACCC
CAATACTCTGAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTAAAGCTACTTGTCACCCGTGGTAAGG
AGCAAGGCTATCTGACCTATGCTGAGGTCAATGACCATCTGCCGGAAGATATCGTCGACTCCGACCAGATCGAAGACATC
ATCCAGATGATTAACGACATGGGCATCCAGGTGCTGGAAGAAGCACCGGACGCCGATGACCTGATGCTGGCCGAGAATAC
CACCGACACCGATGATGATGCGGCGGAAGCGGCTGCTCAAGTGTTGTCCAGCGTTGAGTCTGAAATTGGCCGTACCACCG
ACCCGGTGCGCATGTACATGCGTGAAATGGGGACCGTTGAACTGCTGACGCGCGAAGGCGAAATCGACATCGCCAAACGC
ATTGAAGACGGCATCAACCAGGTTCAGTGCTCGGTTGCCGAGTACCCGGAAGCCATTACCTATTTGCTGGAGCAGTACGA
TCGCGTCGAAGCGGGCGAAGCTCGCCTGTCCGATCTGATCACCGGCTTCGTCGATCCTAACGCGGAAGAAGACATCGCTC
CTACCGCAACGCACGTCGGTTCTGAGCTGTCGACCGAAGAGCAGAAAGATGACGAAGAAGAAGACGACGAAGACGAAGAA
GAAGATGACAACAGCATCGATCCAGAGCTGGCTCGTCAGAAATTCGCCGATCTGCGCGATCAGTATGAAGCGACTCGTGT
AGTCATCAAAAAGAACGGCCGCAGCCACGCCAGCGCAGCAGAAGAAATTCTGAAGCTGTCTGAAGTGTTCAAGCAGTTCC
GCCTGGTGCCAAAACAGTTCGACTTCCTGGTCAATAGCATGCGCATCATGATGGACCGCGTTCGTACTCAAGAACGTATC
ATCATGAAGCTGTGCGTTGAGCAGTGCAAAATGCCGAAGAAAAACTTCGTTACCCTGTTCTCCAGCAACGAAACCAGTGA
TACCTGGTTCGCAGCAGCGCTGGCAATGGCCAAGCCATGGTCAGAAAAGCTCAAAGACGTCGCGGATGACGTGCAGCGCA
GCCTGCAGAAACTGCGTCAGATCGAAGAAGAGACCGGCCTGACCATCGAGCAGGTGAAGGACATTAACCGTCGCATGTCT
ATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCCAACTTGCGTCTGGTTATTTCTATCGCCAAGAA
ATACACCAACCGCGGTTTGCAGTTCCTGGATCTGATCCAGGAAGGCAACATCGGTTTGATGAAAGCGGTAGACAAGTTTG
AATACCGCCGTGGTTATAAGTTCTCAACTTACGCCACCTGGTGGATCCGTCAGGCTATCACCCGCTCTATCGCCGACCAG
GCGCGTACCATCCGTATTCCGGTGCATATGATTGAGACCATCAACAAACTCAACCGTATTTCGCGCCAGATGCTGCAAGA
GATGGGCCGCGAACCGACGCCGGAAGAGCTGGCTGAACGCATGCTGATGCCGGAAGACAAAATCCGCAAAGTGCTGAAGA
TCGCCAAAGAGCCGATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCACACTTGGGCGATTTCATCGAGGATACC
ACCCTCGAGCTGCCGTTGGATTCTGCTACTTCGGAGAGCCTGCGCTCTGCCACGCACGACGTTCTGGCCGGCCTGACCGC
CCGTGAAGCGAAAGTGCTGCGTATGCGTTTCGGTATCGATATGAATACTGACCACACGCTGGAAGAAGTGGGCAAACAGT
TCGACGTTACCCGTGAGCGTATTCGTCAGATCGAAGCCAAAGCGCTGCGTAAACTGCGTCACCCAAGCCGTTCCGAAGTG
CTGCGTAGCTTCCTGGACGACTAA

Upstream 100 bases:

>100_bases
AACGTGAAGAAGTCCGTTCTCTTAACCAAGTGCTAGCGAAGAAAAACTGAATACCTAAACGGCTTAAGTGCCGATAAATG
CGAGGGCAGAGCCCTGCAAT

Downstream 100 bases:

>100_bases
GGTTTGGTTTGGTTGATCGAACTTTAAGCTTTGACAATAAACGGCTTCTTTAACAGGAAGCCGTTTTTTTATGCCTCAAA
ACACCAGTAACCACACAATA

Product: RNA polymerase sigma factor RpoD

Products: NA

Alternate protein names: Sigma-70 [H]

Number of amino acids: Translated: 647; Mature: 646

Protein sequence:

>647_residues
MPPQWAAATTKTPQMLLLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
IQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR
IEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHVGSELSTEEQKDDEEEDDEDEE
EDDNSIDPELARQKFADLRDQYEATRVVIKKNGRSHASAAEEILKLSEVFKQFRLVPKQFDFLVNSMRIMMDRVRTQERI
IMKLCVEQCKMPKKNFVTLFSSNETSDTWFAAALAMAKPWSEKLKDVADDVQRSLQKLRQIEEETGLTIEQVKDINRRMS
IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT
TLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV
LRSFLDD

Sequences:

>Translated_647_residues
MPPQWAAATTKTPQMLLLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
IQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR
IEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHVGSELSTEEQKDDEEEDDEDEE
EDDNSIDPELARQKFADLRDQYEATRVVIKKNGRSHASAAEEILKLSEVFKQFRLVPKQFDFLVNSMRIMMDRVRTQERI
IMKLCVEQCKMPKKNFVTLFSSNETSDTWFAAALAMAKPWSEKLKDVADDVQRSLQKLRQIEEETGLTIEQVKDINRRMS
IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT
TLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV
LRSFLDD
>Mature_646_residues
PPQWAAATTKTPQMLLLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDII
QMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI
EDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHVGSELSTEEQKDDEEEDDEDEEE
DDNSIDPELARQKFADLRDQYEATRVVIKKNGRSHASAAEEILKLSEVFKQFRLVPKQFDFLVNSMRIMMDRVRTQERII
MKLCVEQCKMPKKNFVTLFSSNETSDTWFAAALAMAKPWSEKLKDVADDVQRSLQKLRQIEEETGLTIEQVKDINRRMSI
GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
LELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL
RSFLDD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789448, Length=615, Percent_Identity=91.3821138211382, Blast_Score=1110, Evalue=0.0,
Organism=Escherichia coli, GI1789098, Length=247, Percent_Identity=42.1052631578947, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1789871, Length=242, Percent_Identity=28.5123966942149, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788231, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR007631
- InterPro:   IPR007127
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04546 Sigma70_ner; PF03979 Sigma70_r1_1; PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 73903; Mature: 73771

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPQWAAATTKTPQMLLLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTY
CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEE
AEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQ
ECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAIT
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHVGSELSTEEQKDDEEEDDEDEE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCCCCCC
EDDNSIDPELARQKFADLRDQYEATRVVIKKNGRSHASAAEEILKLSEVFKQFRLVPKQF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
DFLVNSMRIMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFAAALAMAKPW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCH
SEKLKDVADDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
HHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS
HHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
METPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGID
CCCCCCCCCCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PPQWAAATTKTPQMLLLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTY
CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEE
AEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQ
ECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAIT
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHVGSELSTEEQKDDEEEDDEDEE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCCCCCC
EDDNSIDPELARQKFADLRDQYEATRVVIKKNGRSHASAAEEILKLSEVFKQFRLVPKQF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
DFLVNSMRIMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFAAALAMAKPW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCH
SEKLKDVADDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
HHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS
HHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
METPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGID
CCCCCCCCCCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]