| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yehB [H]
Identifier: 157372388
GI number: 157372388
Start: 4608190
End: 4610700
Strand: Direct
Name: yehB [H]
Synonym: Spro_4155
Alternate gene names: 157372388
Gene position: 4608190-4610700 (Clockwise)
Preceding gene: 157372387
Following gene: 157372389
Centisome position: 84.57
GC content: 53.48
Gene sequence:
>2511_bases ATGACGATAAATAAAACCCTCACTTCGCTGCTGACATTGACGTCAATTCTGCTGACTAACCGGGCAGTCGCTGTCGAGTT CGACACCCGTTTACTGGCAGGGGCGTCGCAAGAAGCCGACCTTTCACGCTTTTATCGCCAGTCAGACCTCCCCGCTGGGC AACATACCTTTGATATCTATGTTAATGGCAACTGGAAGGGACGTTTCCCGCTGCAACTGGGGGAGCAGCCTGAGCAGATC GCAATGCGCTATGAGGATGCCGCCGTGTTGGGGATCGATCTCACCGCCTTGCCCAAACAGCAAAAGGTTACGCAACTTCT GCCCCTTAACGCACTGGTTCAAGGCGGCAGCGTCACACAGGAAACCGATACGCTCAGCATGAAACTGTCGGTACCGCAGG CGCATATTATCCACGCGGAAAATGGCTATGTTGACCCACAGTTCTGGCAACAGGGCGAATCTGCCCTGCTATTTTCCTAC AATACCACCTACTATCGTTCACAATTCAAAACCGGCAATACTGCTACCCGGGACGATCTGTACGCCGGGTTGAATTCAGG CTTTAACCTTGAAGGCTGGCAGTTCCGTGATAACAGTACCTTTTCACATTATTCCGGCCGCGACAGCCAATGGAGGAACA ATACCCGTTATTTGCAGCACGGATTTTCATCTATTACCTCAACGTTAACAGGAGGCGATTTCTATTCACCTGGCAATATG TTTGATTCTATCCGTTTGCGCGGGATCTCACTGGCATCCGATACCAATATGTTGCCCAATTCCCAACAGGGATTCTCACC CGTGGTTCACGGCGTGGCACAAACTAATGCTCTGGTAAAAGTGATGCAGAGCGGTAACGTGATTTACCAGGAAAACGTCC CGCCAGGTGCATTTAGCCTTGACAGCATTCAGCCCACCGGCTCCGGTGGCGATCTGCTGGTGATCGTGAAAGAAGCGGAC GGCAGTGAACAGTCTTTCACCGTGCCCTTTTCCGCCGTGCCGAATATGTTGAAGCCGGGTATCGCCAAATACGCTCTGTT GGCCGGCAAGGTTAAGCAAAGCAATACTCGTTACAGCCCAGATTTCCTGCAAAGTTCGTTGCAATACGGCTTCAACAATT TGGTTACCGGTTATGCCGGTGCACTTATCGGTAACGACTACCGTTCTTATCTGCTGGGGAGCGGCTGGAACCTGCCCTTT GGGGCCGTATCCGTGGATATCACCCAGGCAGACGCTCATTTTCCGGGCCGTAGTGAAAGCGGACAAAGTTACCGAATCGC CTACAGCAAATTCCTGGACACCACTGCCACCAACTTTACCCTGGCCGCCTACCGTTATTCGACCAAAGGTTATTATAGCT TTTCAGACGCTATTTATACCCACGACGGTTATCGCCAACTGGCCGATCGACAACCCGGTATGCAAAATCCAGCGGGAGAA TGGTCAGGAGATCCGTTGGATATGAATACGCTGGATGCGCTGCGTTCGGCTCGGCCACGTAATACCTTTAACCTGAGCTT GAACCAACGGCTAGGGGATAGTCTGGGCACACTATTTTTCTCTGGTACCCAACGTGATTATTGGACCGAGCAGGGCAATA GCCGCGAATACCAACTGGGCTATTCCAACAACTTCGGCAAAGTGGATTACAATCTCTCCGCCAGCCGCGTTCGTAATGAC AGCCACGAGGAAGAAACCCGGTATTACCTGTCGATCAATGTGCCCTTCGATGCTTTCGAACACACCGCCTATTTGAGCAG CAGCCTGTCGATGACAGACAACCATTACCAGCAGAGCCAGCTCAGTGTCAGCGGCGTGTCCGGCGACGCCAACCAACTGA GTTATACGCTGTCCGGCGCCAATCAGCCCGGCGGTGAAAACATGGCTGGAGTGAGCGCCAGTTACCGTACGTCGCTTTCG ACACTCGGCGGGTCTTACAGCGAAGCTAGCGATTACCGGCAGGCGGGTCTTAGCGCGCGCGGCAGCTTGGTCGCTATTCC CTGGGATGTACTGGCCGCCAATGAAATTGGCCACACCCTGACGGTAGTCGACGCTCCTCAGGCCGCCGGCCTGATGGTTA ATGGCGATGAAAGTATTATCACTAACCGGGACGGATTGGCACTGGTTCCCTACGCCACACCGTATCGTCAAAATACGCTT ACGCTCTCGGACACCAACGACGCTTCCGGCGCAGAAATTACCAACAACGTCGGTTATATCGTGCCGTTCTACGGTGCGGT CAATCGCGTCAAATTTGCCACCGATCTGCGCCAATCTTATACCCTGACCGCCAGCTTCCCCGACGGCAAACCCCTGCCAT TCGGCACTGAGGTGGTCGATCAAAACGGGCGCGCCGTCGGTTATGTCGGCCAGGCCAGTGTCCTGTACGTCAAGAGTGAA CAGCCGCCGAAGCGCCTCGACGTTAAACTCAACCGAGCTGACGCAAATAGTTGCGTCATTGATCTGACTACCGCCGATAT TGCGACAGTGAACAAAGTTATTTGCCGCTGA
Upstream 100 bases:
>100_bases ACCACTAAAAACCAATGACAGGCTATCGCTAAAATATGTTGATGACCTTGGTGCCTATAAAGAAAAAATCATAACGTCTC ATTGATGAGGTTAAGCAAGG
Downstream 100 bases:
>100_bases TCCCGTGTGATTGAGGAAATTATGAAAACGTTATATTTATCCATTTTAATCGCCGGTCTTTACGCTGGCGAAAGCCAGGC AAAATGCTACGGAAATCCAC
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 835
Protein sequence:
>836_residues MTINKTLTSLLTLTSILLTNRAVAVEFDTRLLAGASQEADLSRFYRQSDLPAGQHTFDIYVNGNWKGRFPLQLGEQPEQI AMRYEDAAVLGIDLTALPKQQKVTQLLPLNALVQGGSVTQETDTLSMKLSVPQAHIIHAENGYVDPQFWQQGESALLFSY NTTYYRSQFKTGNTATRDDLYAGLNSGFNLEGWQFRDNSTFSHYSGRDSQWRNNTRYLQHGFSSITSTLTGGDFYSPGNM FDSIRLRGISLASDTNMLPNSQQGFSPVVHGVAQTNALVKVMQSGNVIYQENVPPGAFSLDSIQPTGSGGDLLVIVKEAD GSEQSFTVPFSAVPNMLKPGIAKYALLAGKVKQSNTRYSPDFLQSSLQYGFNNLVTGYAGALIGNDYRSYLLGSGWNLPF GAVSVDITQADAHFPGRSESGQSYRIAYSKFLDTTATNFTLAAYRYSTKGYYSFSDAIYTHDGYRQLADRQPGMQNPAGE WSGDPLDMNTLDALRSARPRNTFNLSLNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLGYSNNFGKVDYNLSASRVRND SHEEETRYYLSINVPFDAFEHTAYLSSSLSMTDNHYQQSQLSVSGVSGDANQLSYTLSGANQPGGENMAGVSASYRTSLS TLGGSYSEASDYRQAGLSARGSLVAIPWDVLAANEIGHTLTVVDAPQAAGLMVNGDESIITNRDGLALVPYATPYRQNTL TLSDTNDASGAEITNNVGYIVPFYGAVNRVKFATDLRQSYTLTASFPDGKPLPFGTEVVDQNGRAVGYVGQASVLYVKSE QPPKRLDVKLNRADANSCVIDLTTADIATVNKVICR
Sequences:
>Translated_836_residues MTINKTLTSLLTLTSILLTNRAVAVEFDTRLLAGASQEADLSRFYRQSDLPAGQHTFDIYVNGNWKGRFPLQLGEQPEQI AMRYEDAAVLGIDLTALPKQQKVTQLLPLNALVQGGSVTQETDTLSMKLSVPQAHIIHAENGYVDPQFWQQGESALLFSY NTTYYRSQFKTGNTATRDDLYAGLNSGFNLEGWQFRDNSTFSHYSGRDSQWRNNTRYLQHGFSSITSTLTGGDFYSPGNM FDSIRLRGISLASDTNMLPNSQQGFSPVVHGVAQTNALVKVMQSGNVIYQENVPPGAFSLDSIQPTGSGGDLLVIVKEAD GSEQSFTVPFSAVPNMLKPGIAKYALLAGKVKQSNTRYSPDFLQSSLQYGFNNLVTGYAGALIGNDYRSYLLGSGWNLPF GAVSVDITQADAHFPGRSESGQSYRIAYSKFLDTTATNFTLAAYRYSTKGYYSFSDAIYTHDGYRQLADRQPGMQNPAGE WSGDPLDMNTLDALRSARPRNTFNLSLNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLGYSNNFGKVDYNLSASRVRND SHEEETRYYLSINVPFDAFEHTAYLSSSLSMTDNHYQQSQLSVSGVSGDANQLSYTLSGANQPGGENMAGVSASYRTSLS TLGGSYSEASDYRQAGLSARGSLVAIPWDVLAANEIGHTLTVVDAPQAAGLMVNGDESIITNRDGLALVPYATPYRQNTL TLSDTNDASGAEITNNVGYIVPFYGAVNRVKFATDLRQSYTLTASFPDGKPLPFGTEVVDQNGRAVGYVGQASVLYVKSE QPPKRLDVKLNRADANSCVIDLTTADIATVNKVICR >Mature_835_residues TINKTLTSLLTLTSILLTNRAVAVEFDTRLLAGASQEADLSRFYRQSDLPAGQHTFDIYVNGNWKGRFPLQLGEQPEQIA MRYEDAAVLGIDLTALPKQQKVTQLLPLNALVQGGSVTQETDTLSMKLSVPQAHIIHAENGYVDPQFWQQGESALLFSYN TTYYRSQFKTGNTATRDDLYAGLNSGFNLEGWQFRDNSTFSHYSGRDSQWRNNTRYLQHGFSSITSTLTGGDFYSPGNMF DSIRLRGISLASDTNMLPNSQQGFSPVVHGVAQTNALVKVMQSGNVIYQENVPPGAFSLDSIQPTGSGGDLLVIVKEADG SEQSFTVPFSAVPNMLKPGIAKYALLAGKVKQSNTRYSPDFLQSSLQYGFNNLVTGYAGALIGNDYRSYLLGSGWNLPFG AVSVDITQADAHFPGRSESGQSYRIAYSKFLDTTATNFTLAAYRYSTKGYYSFSDAIYTHDGYRQLADRQPGMQNPAGEW SGDPLDMNTLDALRSARPRNTFNLSLNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLGYSNNFGKVDYNLSASRVRNDS HEEETRYYLSINVPFDAFEHTAYLSSSLSMTDNHYQQSQLSVSGVSGDANQLSYTLSGANQPGGENMAGVSASYRTSLST LGGSYSEASDYRQAGLSARGSLVAIPWDVLAANEIGHTLTVVDAPQAAGLMVNGDESIITNRDGLALVPYATPYRQNTLT LSDTNDASGAEITNNVGYIVPFYGAVNRVKFATDLRQSYTLTASFPDGKPLPFGTEVVDQNGRAVGYVGQASVLYVKSEQ PPKRLDVKLNRADANSCVIDLTTADIATVNKVICR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1788427, Length=842, Percent_Identity=36.9358669833729, Blast_Score=551, Evalue=1e-158, Organism=Escherichia coli, GI1786332, Length=865, Percent_Identity=31.6763005780347, Blast_Score=381, Evalue=1e-106, Organism=Escherichia coli, GI1790772, Length=840, Percent_Identity=31.1904761904762, Blast_Score=372, Evalue=1e-104, Organism=Escherichia coli, GI1787172, Length=835, Percent_Identity=32.4550898203593, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI1786744, Length=818, Percent_Identity=29.9511002444988, Blast_Score=342, Evalue=4e-95, Organism=Escherichia coli, GI1789533, Length=850, Percent_Identity=27.4117647058824, Blast_Score=323, Evalue=3e-89, Organism=Escherichia coli, GI87081778, Length=846, Percent_Identity=24.822695035461, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI1789610, Length=828, Percent_Identity=23.1884057971014, Blast_Score=115, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 91399; Mature: 91268
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTINKTLTSLLTLTSILLTNRAVAVEFDTRLLAGASQEADLSRFYRQSDLPAGQHTFDIY CCCHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEE VNGNWKGRFPLQLGEQPEQIAMRYEDAAVLGIDLTALPKQQKVTQLLPLNALVQGGSVTQ EECCCCEECCCCCCCCHHHHHEEECCEEEEEEEEECCCCHHHHHHHCCHHHHCCCCCCCC ETDTLSMKLSVPQAHIIHAENGYVDPQFWQQGESALLFSYNTTYYRSQFKTGNTATRDDL CCCEEEEEEECCCEEEEECCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCCCCHHHH YAGLNSGFNLEGWQFRDNSTFSHYSGRDSQWRNNTRYLQHGFSSITSTLTGGDFYSPGNM HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FDSIRLRGISLASDTNMLPNSQQGFSPVVHGVAQTNALVKVMQSGNVIYQENVPPGAFSL CCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEC DSIQPTGSGGDLLVIVKEADGSEQSFTVPFSAVPNMLKPGIAKYALLAGKVKQSNTRYSP CCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHCCHHHCCCHHHHHHHHCCHHCCCCCCCH DFLQSSLQYGFNNLVTGYAGALIGNDYRSYLLGSGWNLPFGAVSVDITQADAHFPGRSES HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCC GQSYRIAYSKFLDTTATNFTLAAYRYSTKGYYSFSDAIYTHDGYRQLADRQPGMQNPAGE CCEEEEEHHHHHCCCCCCEEEEEEEECCCCEEEECCEEEECCHHHHHHHCCCCCCCCCCC WSGDPLDMNTLDALRSARPRNTFNLSLNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLG CCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHCCCHHEEEECCCCCCCCCCCCCCEEEEEC YSNNFGKVDYNLSASRVRNDSHEEETRYYLSINVPFDAFEHTAYLSSSLSMTDNHYQQSQ CCCCCCEEEECCCHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHCE LSVSGVSGDANQLSYTLSGANQPGGENMAGVSASYRTSLSTLGGSYSEASDYRQAGLSAR EEEECCCCCCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC GSLVAIPWDVLAANEIGHTLTVVDAPQAAGLMVNGDESIITNRDGLALVPYATPYRQNTL CCEEEECHHHEEHHCCCCEEEEEECCCCCCEEEECCCCEEECCCCEEEECCCCCCCCCEE TLSDTNDASGAEITNNVGYIVPFYGAVNRVKFATDLRQSYTLTASFPDGKPLPFGTEVVD EEECCCCCCCCEEECCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHC QNGRAVGYVGQASVLYVKSEQPPKRLDVKLNRADANSCVIDLTTADIATVNKVICR CCCCEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHCC >Mature Secondary Structure TINKTLTSLLTLTSILLTNRAVAVEFDTRLLAGASQEADLSRFYRQSDLPAGQHTFDIY CCHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEE VNGNWKGRFPLQLGEQPEQIAMRYEDAAVLGIDLTALPKQQKVTQLLPLNALVQGGSVTQ EECCCCEECCCCCCCCHHHHHEEECCEEEEEEEEECCCCHHHHHHHCCHHHHCCCCCCCC ETDTLSMKLSVPQAHIIHAENGYVDPQFWQQGESALLFSYNTTYYRSQFKTGNTATRDDL CCCEEEEEEECCCEEEEECCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCCCCHHHH YAGLNSGFNLEGWQFRDNSTFSHYSGRDSQWRNNTRYLQHGFSSITSTLTGGDFYSPGNM HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FDSIRLRGISLASDTNMLPNSQQGFSPVVHGVAQTNALVKVMQSGNVIYQENVPPGAFSL CCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEC DSIQPTGSGGDLLVIVKEADGSEQSFTVPFSAVPNMLKPGIAKYALLAGKVKQSNTRYSP CCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHCCHHHCCCHHHHHHHHCCHHCCCCCCCH DFLQSSLQYGFNNLVTGYAGALIGNDYRSYLLGSGWNLPFGAVSVDITQADAHFPGRSES HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCC GQSYRIAYSKFLDTTATNFTLAAYRYSTKGYYSFSDAIYTHDGYRQLADRQPGMQNPAGE CCEEEEEHHHHHCCCCCCEEEEEEEECCCCEEEECCEEEECCHHHHHHHCCCCCCCCCCC WSGDPLDMNTLDALRSARPRNTFNLSLNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLG CCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHCCCHHEEEECCCCCCCCCCCCCCEEEEEC YSNNFGKVDYNLSASRVRNDSHEEETRYYLSINVPFDAFEHTAYLSSSLSMTDNHYQQSQ CCCCCCEEEECCCHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHCE LSVSGVSGDANQLSYTLSGANQPGGENMAGVSASYRTSLSTLGGSYSEASDYRQAGLSAR EEEECCCCCCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC GSLVAIPWDVLAANEIGHTLTVVDAPQAAGLMVNGDESIITNRDGLALVPYATPYRQNTL CCEEEECHHHEEHHCCCCEEEEEECCCCCCEEEECCCCEEECCCCEEEECCCCCCCCCEE TLSDTNDASGAEITNNVGYIVPFYGAVNRVKFATDLRQSYTLTASFPDGKPLPFGTEVVD EEECCCCCCCCEEECCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHC QNGRAVGYVGQASVLYVKSEQPPKRLDVKLNRADANSCVIDLTTADIATVNKVICR CCCCEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097040 [H]