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The map label for this gene is yhfX [H]

Identifier: 157372239

GI number: 157372239

Start: 4439108

End: 4440274

Strand: Direct

Name: yhfX [H]

Synonym: Spro_4005

Alternate gene names: 157372239

Gene position: 4439108-4440274 (Clockwise)

Preceding gene: 157372238

Following gene: 157372240

Centisome position: 81.47

GC content: 53.47

Gene sequence:

>1167_bases
ATGTTTCTAAATGCGCTGGAAAAACAAAACCCTGCCCTGATTGATGCCGCTGTTCACTTTTGGCGTAACGGCGCTATCAA
GCCGGATTGCTACGTTATCGATGTCGACCTGGTATTGGAAAATGCCCGGCTATTACAGGAATGCGCGGAGAAACTGGGCC
TTTCGCTGTACCTGATGAGCAAACAGTTTGGCCGCAATCCGCTGCTATGCCAGCTGCTGTTGAAGCAGGGTTATCAGGGC
ATTGTCGCCGTTGATTTTAAAGAGGCGCGTCAACTTTGGCAGCAGGGTTTACCGATAGCCCACATTGGCCATCTGGTGCA
AACGCCCGTCAATATGATTGATGAAGCCATTGCCCAGCGTCCAGAAGTCATTACCGTTTATAGCGTTGAAAAAGCACGGC
AGATCTCCACTGCGGCGCTGCGCCAAAATCACCGGCAGGCGCTGCTACTGAAAGTTCAGGATAAAGGCGACGTGGTCTAT
CCGGGCCAGGAGGCGGGTTTCTTATTGGCAGAACTGCCGGACGTGATTAATCAAATCAGCAGGATGGCAGGCGTTGAAAT
TATTGGGGTCACTCACTTCCCCTGCATGCTATTCAACGAGCAACGGCAAACTACCGAGGCAACCCCCAATCTCGCCACAT
TAGCCAGGGCAAAAAACCTGCTGGAACAGCAGGGTATTGAAGTTCGCCAAATGAATGCCGCTTCGGCAACCTGTATTGAA
ACCCTGCCCAAACTGGCCGCTGCCGGCGTGACCCATACCGAACCTGGCCATGCCCTGACGGGCACGCAGCCCGCGAATCA
GTACGGCGGCGGCCCGGAAAAAATAGCCATGCTTTATCTTTCTGAAATTTCGCACGGCCAGGACAACATCAGTTTCTGCT
ATGGCGGTGGCTACTATCGCCGCGGTCACCTGCAAAACGCGCTGGTGCTCGACGGCCAATGGCAGCGCTGTCGCGTACTG
CCGATAGATAGCGACAGCATCGATTATACGCTGCCATTAGCAGGACGCTGGCCTGTCAGCAGCCCGGTGATTATGTGTTT
TCGCACTCAGGTTTTTGTAACACGCAGCGATGTGGCGCTGATAAGCGGTATTCAAATGGGTAACCCTCAACTGTTGGGGG
TGTTTGATAGTCTCGGTAACGACCTGGCAAGGAGCCATCATGGATAA

Upstream 100 bases:

>100_bases
TGGCCTGTATCTCGCTCAGACGGACAGCAGCACAGTGTGAAGTTTTGATCACGCATTAAATATTCAAAAAAATGAATTAA
TAGCACACATCGAGGGACCT

Downstream 100 bases:

>100_bases
GTTTGTGGTTTTGGTCATTGATAGTTTTGGCGTGGGCGCTATGGGAGATGTTCCCGAAGTGCGCCCACAGGACATTGGCG
CCAATACTTGCGGCCATATT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MFLNALEKQNPALIDAAVHFWRNGAIKPDCYVIDVDLVLENARLLQECAEKLGLSLYLMSKQFGRNPLLCQLLLKQGYQG
IVAVDFKEARQLWQQGLPIAHIGHLVQTPVNMIDEAIAQRPEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVY
PGQEAGFLLAELPDVINQISRMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLLEQQGIEVRQMNAASATCIE
TLPKLAAAGVTHTEPGHALTGTQPANQYGGGPEKIAMLYLSEISHGQDNISFCYGGGYYRRGHLQNALVLDGQWQRCRVL
PIDSDSIDYTLPLAGRWPVSSPVIMCFRTQVFVTRSDVALISGIQMGNPQLLGVFDSLGNDLARSHHG

Sequences:

>Translated_388_residues
MFLNALEKQNPALIDAAVHFWRNGAIKPDCYVIDVDLVLENARLLQECAEKLGLSLYLMSKQFGRNPLLCQLLLKQGYQG
IVAVDFKEARQLWQQGLPIAHIGHLVQTPVNMIDEAIAQRPEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVY
PGQEAGFLLAELPDVINQISRMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLLEQQGIEVRQMNAASATCIE
TLPKLAAAGVTHTEPGHALTGTQPANQYGGGPEKIAMLYLSEISHGQDNISFCYGGGYYRRGHLQNALVLDGQWQRCRVL
PIDSDSIDYTLPLAGRWPVSSPVIMCFRTQVFVTRSDVALISGIQMGNPQLLGVFDSLGNDLARSHHG
>Mature_388_residues
MFLNALEKQNPALIDAAVHFWRNGAIKPDCYVIDVDLVLENARLLQECAEKLGLSLYLMSKQFGRNPLLCQLLLKQGYQG
IVAVDFKEARQLWQQGLPIAHIGHLVQTPVNMIDEAIAQRPEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVY
PGQEAGFLLAELPDVINQISRMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLLEQQGIEVRQMNAASATCIE
TLPKLAAAGVTHTEPGHALTGTQPANQYGGGPEKIAMLYLSEISHGQDNISFCYGGGYYRRGHLQNALVLDGQWQRCRVL
PIDSDSIDYTLPLAGRWPVSSPVIMCFRTQVFVTRSDVALISGIQMGNPQLLGVFDSLGNDLARSHHG

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=385, Percent_Identity=55.0649350649351, Blast_Score=437, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 42758; Mature: 42758

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLNALEKQNPALIDAAVHFWRNGAIKPDCYVIDVDLVLENARLLQECAEKLGLSLYLMS
CCCCCHHCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEC
KQFGRNPLLCQLLLKQGYQGIVAVDFKEARQLWQQGLPIAHIGHLVQTPVNMIDEAIAQR
HHHCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVYPGQEAGFLLAELPDVINQIS
CCEEEEEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHH
RMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLLEQQGIEVRQMNAASATCIE
HHCCCEEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHH
TLPKLAAAGVTHTEPGHALTGTQPANQYGGGPEKIAMLYLSEISHGQDNISFCYGGGYYR
HHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEE
RGHLQNALVLDGQWQRCRVLPIDSDSIDYTLPLAGRWPVSSPVIMCFRTQVFVTRSDVAL
CCCCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEECCCCE
ISGIQMGNPQLLGVFDSLGNDLARSHHG
EECCCCCCCCEEHHHHHHCHHHHHCCCC
>Mature Secondary Structure
MFLNALEKQNPALIDAAVHFWRNGAIKPDCYVIDVDLVLENARLLQECAEKLGLSLYLMS
CCCCCHHCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEC
KQFGRNPLLCQLLLKQGYQGIVAVDFKEARQLWQQGLPIAHIGHLVQTPVNMIDEAIAQR
HHHCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVYPGQEAGFLLAELPDVINQIS
CCEEEEEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHH
RMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLLEQQGIEVRQMNAASATCIE
HHCCCEEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHH
TLPKLAAAGVTHTEPGHALTGTQPANQYGGGPEKIAMLYLSEISHGQDNISFCYGGGYYR
HHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEE
RGHLQNALVLDGQWQRCRVLPIDSDSIDYTLPLAGRWPVSSPVIMCFRTQVFVTRSDVAL
CCCCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEECCCCE
ISGIQMGNPQLLGVFDSLGNDLARSHHG
EECCCCCCCCEEHHHHHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]