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The map label for this gene is sgbU [H]

Identifier: 157372172

GI number: 157372172

Start: 4362602

End: 4363462

Strand: Direct

Name: sgbU [H]

Synonym: Spro_3938

Alternate gene names: 157372172

Gene position: 4362602-4363462 (Clockwise)

Preceding gene: 157372171

Following gene: 157372173

Centisome position: 80.06

GC content: 59.23

Gene sequence:

>861_bases
ATGCGCCAGCACCCATTGGGAATTTATGAAAAAGCCCTGCCGAAACACCTGACCTGGCCCGAGCGTCTGGCGCTGGCCAA
GGCCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAAGTGACGAACGGCTGGCACGCCTGAGCTGGAGCAAAGAAC
AGCGGCTGTCGCTAGTCAGCGCCATGCTGGAAACCGGCATCAGCATCCCATCAATGTGCCTGTCCGGCCACCGCCGCTTT
CCGTTCGGCAGCCATGACGATGCGCTGCGCCAACGCGCCTTCGAGGTGATGGAACAGGCGATCCAACTGGCGAAGGACGT
AGGTATCCGTACCATCCAGCTCGCCGGTTATGACGTCTATTACGAACAGCAGGACGAAAGCACCCTCGCCCGCTTCACCG
AAGGCATGCAATGGGCGGTCGAACGCGCCGCCGCCGCCCAGGTGATGCTGGCGGTGGAGATCATGGACACCGCTTTTATG
AACTCAATCAGCAAGTGGAAGGCATGGGATACCTGCCTGGCATCGCCGTGGTTCACGGTCTATCCGGACGTCGGCAACCT
CAGCGCCTGGGGCAATGACGTGGCGCAGGAACTGGCGCTGGGCATTGACCGCATCGCCGCCATCCATCTGAAAGACACCT
ATCCGGTCACCGAAAGCTCGCCAGGGCAGTTCCGCGACGTGCCCTTTGGTGAAGGCTGCGTCGACTTCGTCGCGCTATTC
CGCACGCTGAAACAGCTTAACTATCGCGGCGCTTTCCTGATCGAGATGTGGACCGAGAAAGCCGAAGAGCCGGTGGCAGA
AATCGTACAGGCACGCCGCTGGATCGAACAAAAAATGCAACAAGGGGGTATGACATGCTAA

Upstream 100 bases:

>100_bases
ACCGCTTTTATCGTCGGCCGGGCGTTGGCAGAAGCTGCCGATCCGCTGACCGCCGCCGGTCAGTTCCGCACCGCCATTGA
TGACATCTGGAGAAGTTGAT

Downstream 100 bases:

>100_bases
CGCTGTCGCAGCTGAAACAACAGGTACTGGAAGCCAACCTCGACCTGCCGCGCCATAACCTGGTGACCTTCACCTGGGGC
AACGTCAGCGCGGTGGATCG

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRQHPLGIYEKALPKHLTWPERLALAKACGFDFVEMSVDESDERLARLSWSKEQRLSLVSAMLETGISIPSMCLSGHRRF
PFGSHDDALRQRAFEVMEQAIQLAKDVGIRTIQLAGYDVYYEQQDESTLARFTEGMQWAVERAAAAQVMLAVEIMDTAFM
NSISKWKAWDTCLASPWFTVYPDVGNLSAWGNDVAQELALGIDRIAAIHLKDTYPVTESSPGQFRDVPFGEGCVDFVALF
RTLKQLNYRGAFLIEMWTEKAEEPVAEIVQARRWIEQKMQQGGMTC

Sequences:

>Translated_286_residues
MRQHPLGIYEKALPKHLTWPERLALAKACGFDFVEMSVDESDERLARLSWSKEQRLSLVSAMLETGISIPSMCLSGHRRF
PFGSHDDALRQRAFEVMEQAIQLAKDVGIRTIQLAGYDVYYEQQDESTLARFTEGMQWAVERAAAAQVMLAVEIMDTAFM
NSISKWKAWDTCLASPWFTVYPDVGNLSAWGNDVAQELALGIDRIAAIHLKDTYPVTESSPGQFRDVPFGEGCVDFVALF
RTLKQLNYRGAFLIEMWTEKAEEPVAEIVQARRWIEQKMQQGGMTC
>Mature_286_residues
MRQHPLGIYEKALPKHLTWPERLALAKACGFDFVEMSVDESDERLARLSWSKEQRLSLVSAMLETGISIPSMCLSGHRRF
PFGSHDDALRQRAFEVMEQAIQLAKDVGIRTIQLAGYDVYYEQQDESTLARFTEGMQWAVERAAAAQVMLAVEIMDTAFM
NSISKWKAWDTCLASPWFTVYPDVGNLSAWGNDVAQELALGIDRIAAIHLKDTYPVTESSPGQFRDVPFGEGCVDFVALF
RTLKQLNYRGAFLIEMWTEKAEEPVAEIVQARRWIEQKMQQGGMTC

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=77.972027972028, Blast_Score=479, Evalue=1e-137,
Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=58.8028169014084, Blast_Score=352, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 32426; Mature: 32426

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQHPLGIYEKALPKHLTWPERLALAKACGFDFVEMSVDESDERLARLSWSKEQRLSLVS
CCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCHHEEECCCCHHHHHHHHCCCHHHHHHHHH
AMLETGISIPSMCLSGHRRFPFGSHDDALRQRAFEVMEQAIQLAKDVGIRTIQLAGYDVY
HHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE
YEQQDESTLARFTEGMQWAVERAAAAQVMLAVEIMDTAFMNSISKWKAWDTCLASPWFTV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDVGNLSAWGNDVAQELALGIDRIAAIHLKDTYPVTESSPGQFRDVPFGEGCVDFVALF
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RTLKQLNYRGAFLIEMWTEKAEEPVAEIVQARRWIEQKMQQGGMTC
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRQHPLGIYEKALPKHLTWPERLALAKACGFDFVEMSVDESDERLARLSWSKEQRLSLVS
CCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCHHEEECCCCHHHHHHHHCCCHHHHHHHHH
AMLETGISIPSMCLSGHRRFPFGSHDDALRQRAFEVMEQAIQLAKDVGIRTIQLAGYDVY
HHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE
YEQQDESTLARFTEGMQWAVERAAAAQVMLAVEIMDTAFMNSISKWKAWDTCLASPWFTV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDVGNLSAWGNDVAQELALGIDRIAAIHLKDTYPVTESSPGQFRDVPFGEGCVDFVALF
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RTLKQLNYRGAFLIEMWTEKAEEPVAEIVQARRWIEQKMQQGGMTC
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]