BacMap

Definition	Serratia proteamaculans 568 chromosome, complete genome.
Accession	NC_009832
Length	5,448,853

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The map label for this gene is ygfF [C]

Identifier: 157372101

GI number: 157372101

Start: 4278954

End: 4279703

Strand: Direct

Name: ygfF [C]

Synonym: Spro_3866

Alternate gene names: 157372101

Gene position: 4278954-4279703 (Clockwise)

Preceding gene: 157372100

Following gene: 157372102

Centisome position: 78.53

GC content: 48.13

Gene sequence:

>750_bases
ATGAAACGTTTTAAAAATAAAATCGCCCTGATCACGGGCAGCTCAAAAGGTATTGGCGCGGCGATTGCCAAACGGCTGTC
AGCCGAAGGTGCCATTGTTTTCATTAACTACTCTAGAGGGCAGGATGATGCCAACAGATTAGTTAAAGAGATCAATCAAC
AAGGGGGGATCGCTTTTCCTTTGCAGGCGAATGTGGCCATTGAATCCGAGGTGAATAAACTGCTGGCTGATATTATCGCC
CAGTACGGCCGAGTCGACGTATTGGTTAACAATGCCGGCGTCTATGCAACTGGCAGTTTAGAAGAGTTTAATGCTCAAGA
ATATGAGCGGCATTTTAATCTCAATGTTAAAGGGCTGATTTATTGTACCAGAGCGGCCGTTAACGCCATGCCGGAGACTG
GCGGTTCCATTGTCAATATCAGCTCCAGCGTCACTTCATTCACCCCAGCCAATTCTATGGTCTATACCGCGTCAAAGGCT
GCCGTTGATGCCATCACCAAAACATTGGCGAATGAACTCGGCAAAAGAAACATTCGCGTTAATGCGGTCAATCCGGGGTT
GGTCGTCACCGAAGGTGTGCACGATAGCGGCTTCTTTAATAGTGATTTCAAAACGCATATTGAATCAGTCACCCCGCTTG
GCCGTATTGGGACACCACAGGATATTGCCCCCGCCGTCGCTTATCTGGCCTCTGATGAGGCCAGTTGGGTCACCGGTGAA
TGTTTAATTATTGGCGGCGGTTTACATTAA

Upstream 100 bases:

>100_bases
TATCTGATAGACAATGATTTTTTGTTTTTTCATTTATGCAATTAACGTCGGGGTCAATGTAGTTTGTCGCGAATTCCACC
TTCACGCTGGAGAGTCATTA

Downstream 100 bases:

>100_bases
TATTGTTAGAGGCAAGCGTGAAAATGAATTTAGATAAAGAATACGGCCCACTGATCAACGGCGTTTTTGAGCTGAATAAT
ACGGATCTGCATCCCATGAT

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKRFKNKIALITGSSKGIGAAIAKRLSAEGAIVFINYSRGQDDANRLVKEINQQGGIAFPLQANVAIESEVNKLLADIIA
QYGRVDVLVNNAGVYATGSLEEFNAQEYERHFNLNVKGLIYCTRAAVNAMPETGGSIVNISSSVTSFTPANSMVYTASKA
AVDAITKTLANELGKRNIRVNAVNPGLVVTEGVHDSGFFNSDFKTHIESVTPLGRIGTPQDIAPAVAYLASDEASWVTGE
CLIIGGGLH

Sequences:

>Translated_249_residues
MKRFKNKIALITGSSKGIGAAIAKRLSAEGAIVFINYSRGQDDANRLVKEINQQGGIAFPLQANVAIESEVNKLLADIIA
QYGRVDVLVNNAGVYATGSLEEFNAQEYERHFNLNVKGLIYCTRAAVNAMPETGGSIVNISSSVTSFTPANSMVYTASKA
AVDAITKTLANELGKRNIRVNAVNPGLVVTEGVHDSGFFNSDFKTHIESVTPLGRIGTPQDIAPAVAYLASDEASWVTGE
CLIIGGGLH
>Mature_249_residues
MKRFKNKIALITGSSKGIGAAIAKRLSAEGAIVFINYSRGQDDANRLVKEINQQGGIAFPLQANVAIESEVNKLLADIIA
QYGRVDVLVNNAGVYATGSLEEFNAQEYERHFNLNVKGLIYCTRAAVNAMPETGGSIVNISSSVTSFTPANSMVYTASKA
AVDAITKTLANELGKRNIRVNAVNPGLVVTEGVHDSGFFNSDFKTHIESVTPLGRIGTPQDIAPAVAYLASDEASWVTGE
CLIIGGGLH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=34.9593495934959, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.5490196078431, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=30.8, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=33.0645161290323, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=33.195020746888, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=31.3253012048193, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=30.46875, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI109715829, Length=259, Percent_Identity=31.2741312741313, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI59889578, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=32.1428571428571, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=34.9462365591398, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI33667109, Length=232, Percent_Identity=31.8965517241379, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=30.5019305019305, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI209862901, Length=193, Percent_Identity=30.5699481865285, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI19923983, Length=193, Percent_Identity=30.5699481865285, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=28, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=27.4725274725275, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4758504, Length=265, Percent_Identity=26.4150943396226, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.037037037037, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=37.3983739837398, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=35.6275303643725, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=35.0806451612903, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=34.412955465587, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=34.2857142857143, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=32.4, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.1204819277108, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=31.640625, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=30.4878048780488, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=31.6666666666667, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=30.3846153846154, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787820, Length=229, Percent_Identity=31.0043668122271, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787526, Length=241, Percent_Identity=29.045643153527, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=26.3565891472868, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787545, Length=257, Percent_Identity=26.4591439688716, Blast_Score=70, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=34.4961240310078, Blast_Score=137, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=34.4, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=36.4372469635627, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=33.9622641509434, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=36.2962962962963, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=34.0080971659919, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.4427480916031, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=32.9268292682927, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=33.7078651685393, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.9433962264151, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.0606060606061, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=33.0798479087452, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=30.3370786516854, Blast_Score=106, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=32.3076923076923, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=31.2267657992565, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=32.3420074349442, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.1526717557252, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=31.0344827586207, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=29.0836653386454, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.7116104868914, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=29.7709923664122, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=30.2238805970149, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.9212598425197, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.1740890688259, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=27.7566539923954, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=235, Percent_Identity=28.936170212766, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=265, Percent_Identity=27.9245283018868, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=244, Percent_Identity=29.0983606557377, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=213, Percent_Identity=27.2300469483568, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=25.5208333333333, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=208, Percent_Identity=31.7307692307692, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=220, Percent_Identity=29.5454545454545, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=27.34375, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=258, Percent_Identity=29.4573643410853, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=256, Percent_Identity=29.296875, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=28.3422459893048, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=38.5826771653543, Blast_Score=168, Evalue=3e-42,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=38.0392156862745, Blast_Score=159, Evalue=1e-39,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=36.144578313253, Blast_Score=153, Evalue=9e-38,
Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=36.6141732283465, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30.8, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=34.9794238683128, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=32.7935222672065, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=34.4, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=36.8421052631579, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=29.9595141700405, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=31.2757201646091, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=29.7959183673469, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=31.1475409836066, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=30.7053941908714, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24663911, Length=240, Percent_Identity=28.75, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI18859837, Length=267, Percent_Identity=28.8389513108614, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=28.0487804878049, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648693, Length=239, Percent_Identity=28.8702928870293, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355889, Length=239, Percent_Identity=28.8702928870293, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=28.3524904214559, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648944, Length=233, Percent_Identity=27.4678111587983, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649181, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007232, Length=183, Percent_Identity=28.9617486338798, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=23.7113402061856, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=201, Percent_Identity=32.3383084577114, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24665243, Length=201, Percent_Identity=32.3383084577114, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=28.4916201117318, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21356301, Length=181, Percent_Identity=28.1767955801105, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24665247, Length=203, Percent_Identity=31.5270935960591, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 26416; Mature: 26416

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFKNKIALITGSSKGIGAAIAKRLSAEGAIVFINYSRGQDDANRLVKEINQQGGIAFP
CCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
LQANVAIESEVNKLLADIIAQYGRVDVLVNNAGVYATGSLEEFNAQEYERHFNLNVKGLI
EECCEEEHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHCCHHHHHHHCCCCEEEEE
YCTRAAVNAMPETGGSIVNISSSVTSFTPANSMVYTASKAAVDAITKTLANELGKRNIRV
EEEHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEE
NAVNPGLVVTEGVHDSGFFNSDFKTHIESVTPLGRIGTPQDIAPAVAYLASDEASWVTGE
EEECCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECE
CLIIGGGLH
EEEEECCCC
>Mature Secondary Structure
MKRFKNKIALITGSSKGIGAAIAKRLSAEGAIVFINYSRGQDDANRLVKEINQQGGIAFP
CCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
LQANVAIESEVNKLLADIIAQYGRVDVLVNNAGVYATGSLEEFNAQEYERHFNLNVKGLI
EECCEEEHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHCCHHHHHHHCCCCEEEEE
YCTRAAVNAMPETGGSIVNISSSVTSFTPANSMVYTASKAAVDAITKTLANELGKRNIRV
EEEHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEE
NAVNPGLVVTEGVHDSGFFNSDFKTHIESVTPLGRIGTPQDIAPAVAYLASDEASWVTGE
EEECCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECE
CLIIGGGLH
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]