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The map label for this gene is hdeD [H]

Identifier: 157372094

GI number: 157372094

Start: 4271783

End: 4272352

Strand: Direct

Name: hdeD [H]

Synonym: Spro_3859

Alternate gene names: 157372094

Gene position: 4271783-4272352 (Clockwise)

Preceding gene: 157372092

Following gene: 157372095

Centisome position: 78.4

GC content: 52.81

Gene sequence:

>570_bases
ATGTTAAATATGAATCATCTTCATTCGTTGAACATCGACGAACAGAGCCTAAAGAAACAACGCACCCCGCTGTTAATCAT
CTCGCTACTGCTGTTACTGGGCGGCCTTTTCTGCCTGTTCAGCCCCTTCGCCTCCGGCGCGGCGATCAGTATGGTCGTGG
GGATTTTCTTGTTGCTGAGTGGATTCGGTCTGATTTTCACCATGGTTGCCAACCGGTTGCAAAATACCTGGCCGATGATC
GGCGGTATTCTGCTCGGGGTGGCTTACCTGATTATCGGCTACGTTTTTATCACCAACCCGGCGGTGGGCATTTTCGCCAT
GGCAATTTATCTCGCCGCCTTGTTTGCGCTGGGTGGGATTGCTCGTCTGATCGCCGGCTATAAGCTGCGTGAAGTTAAAG
GAAGCTGGTTGCAATTGGTGATTGGCGTTCTGGATTTGGCGATTGCCTGGCTGCTGCTCAGCGCCGATCCCGTGACGTCG
GTGGTGTTGGTGACTACCATCGTCGGTATTGAAATGCTGTTCAGCTCTTTCAGCCTGTTCCAGGTTGCCCGACTACTGAA
ACGGGCGTGA

Upstream 100 bases:

>100_bases
GGAGGAAAAACACCGCAGCCATGCATCATCCTCAAGGCGGCGTGTTCCACTATACTCAGTGGTGAACAGTACAGGACATT
CAAAACAAGGGAGTTACATC

Downstream 100 bases:

>100_bases
TCCCGCAGCGGAGCCACCCGGCTCCGCTTTTTGGTTGCCAAACCGCCTGATGACATCGGGACATCAACGACAAACAGCCC
GACTAAGAGTAAAGTTTCAC

Product: acid-resistance membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLNMNHLHSLNIDEQSLKKQRTPLLIISLLLLLGGLFCLFSPFASGAAISMVVGIFLLLSGFGLIFTMVANRLQNTWPMI
GGILLGVAYLIIGYVFITNPAVGIFAMAIYLAALFALGGIARLIAGYKLREVKGSWLQLVIGVLDLAIAWLLLSADPVTS
VVLVTTIVGIEMLFSSFSLFQVARLLKRA

Sequences:

>Translated_189_residues
MLNMNHLHSLNIDEQSLKKQRTPLLIISLLLLLGGLFCLFSPFASGAAISMVVGIFLLLSGFGLIFTMVANRLQNTWPMI
GGILLGVAYLIIGYVFITNPAVGIFAMAIYLAALFALGGIARLIAGYKLREVKGSWLQLVIGVLDLAIAWLLLSADPVTS
VVLVTTIVGIEMLFSSFSLFQVARLLKRA
>Mature_189_residues
MLNMNHLHSLNIDEQSLKKQRTPLLIISLLLLLGGLFCLFSPFASGAAISMVVGIFLLLSGFGLIFTMVANRLQNTWPMI
GGILLGVAYLIIGYVFITNPAVGIFAMAIYLAALFALGGIARLIAGYKLREVKGSWLQLVIGVLDLAIAWLLLSADPVTS
VVLVTTIVGIEMLFSSFSLFQVARLLKRA

Specific function: Unknown

COG id: COG3247

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789927, Length=188, Percent_Identity=48.936170212766, Blast_Score=177, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20439; Mature: 20439

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNMNHLHSLNIDEQSLKKQRTPLLIISLLLLLGGLFCLFSPFASGAAISMVVGIFLLLS
CCCCCHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GFGLIFTMVANRLQNTWPMIGGILLGVAYLIIGYVFITNPAVGIFAMAIYLAALFALGGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARLIAGYKLREVKGSWLQLVIGVLDLAIAWLLLSADPVTSVVLVTTIVGIEMLFSSFSLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QVARLLKRA
HHHHHHHCC
>Mature Secondary Structure
MLNMNHLHSLNIDEQSLKKQRTPLLIISLLLLLGGLFCLFSPFASGAAISMVVGIFLLLS
CCCCCHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GFGLIFTMVANRLQNTWPMIGGILLGVAYLIIGYVFITNPAVGIFAMAIYLAALFALGGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARLIAGYKLREVKGSWLQLVIGVLDLAIAWLLLSADPVTSVVLVTTIVGIEMLFSSFSLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QVARLLKRA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]