| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is glnD
Identifier: 157372027
GI number: 157372027
Start: 4191915
End: 4194593
Strand: Direct
Name: glnD
Synonym: Spro_3792
Alternate gene names: 157372027
Gene position: 4191915-4194593 (Clockwise)
Preceding gene: 157372026
Following gene: 157372028
Centisome position: 76.93
GC content: 59.43
Gene sequence:
>2679_bases ATGTCTGAAAACTTTCGCCAACAAGACACCTCGGTCATTTCGCCACAGGCCGTACCGGTGCAGCCTGAATATCCCAACGC CTATGGCGATGAGGAGATTAACTGCATCGCGCTGAAACAACGCCTGGAGCAGTTCCAATTATGGCTGGCGGCAGCGTTCA ACGCCGGTTCCAGCGCCGAAAGCCTGGTAGCGGCCCGCAGCGACTTTATCGACCGCCTGCTGCGCCGTCTGTGGGTCTTC TACGGGTTCGAGGATATTCCGGAAACCGCGCTGGTTGCCGTTGGCGGCTATGGCCGTGGCGAGCTGCACCCGCTCTCGGA CATTGACGTGCTGGTGCTCAGCCAGCGCCGCCTGAATGAGCAGCAATCCCAACGCGTGGGGGAATTTATCACCCTGCTGT GGGATCTGAAGCTGGAAGTCGGCCACAGTGTGCGAACCCTGGAAGAATGCCTGCTGGAAGGGCTGGCGGACCTGACCGTC GCCACCAACCTGATTGAATCGCGGATGATCTGCGGCGATGTCGCACTGTTTCTGCAAATGCAAAAACATATCTTCAGCGA TGGTTTCTGGCCCTCCCCGCAATTTTTCCACGCCAAGGTGGTTGAGCAGCAGGAACGCCATCAGCGATACCACGGTACCA GCTACAACCTGGAACCGGATATCAAGAGCAGCCCCGGTGGCCTGCGCGATATTCACACCTTGCTGTGGGTGGCGCGTCGT CACTTTGGCGCTACATCACTGGACGAAATGGTCGGCTTCGGCTTTCTCACTCAGGCCGAGCGCAACGAGCTGAACGAATG CCAGAGCTTCCTGTGGCGCATCCGCTTCGCACTGCACCTGGTGCTGCCGCGCTACGACAACCGTTTACTGTTCGATCGCC AGCTCAACGTGGCACAGTTACTGCGTTATGAGGGGGAAGGCAACGAACCGGTTGAACGCATGATGAAGGATTTTTATCGC ATGACGCGCCGCGTCGGCGAACTGAATCATATGCTGCTGCAGCTGTTCGACGAGGCAATTCTGGCGCTGGACGCGACGGA AAAACCACGTCCGCTGAACGACGATTTCCAACTGCGTGGCGATCTGATCGACCTGCGTGATGAAACGCTGTTTATCCGCC AGCCGGAATCCATCATGCGGATGTTCTACCTGATGGTACGCAACCGCGAGATCAAAGGCATTTATTCCACCACAGTACGC CAGCTGCGTCATGCGCGCCGCCATTTGAAGCAGCCGCTCTGCACCATTCCTGAGGCACGCGAACTGTTTATGGCCATTCT GCGCCACCCCGGCGCGGTCTCCCGGGCGTTGGTGCCGATGCACCGCCACAGCGTGCTGTGGGCCTATATGCCACAGTGGG GCAAAATCGTCGGGCAAATGCAGTTCGATCTGTTCCACGCCTACACCGTCGACGAACACACCATTCGCGTCCTGCAAAAA CTGGAAAGCTTTGCCGATGCCGAAACGCGACCGCGCCATCCGCTGTGTGTCGAGCTGTATCCACGCCTGCCGAATCCGGA ACTGCTACTGCTGGCCGCCCTGTTCCACGATATCGCCAAAGGGCGCGGCGGCGACCATTCGATCCTCGGTGCGCAGGACG TGCTGGAGTTCGCCGAAGTCCATGGGCTGAATTCCCGCGAGGCCCAACTGGTCGCCTGGCTGGTGCGTTGTCATCTGCTG ATGTCGGTGACCGCCCAACGCCGCGACATTCAGGATCCGACCGTTATTCAGCAGTTCAGCGCCGAAGTGCAGAGCGAAAC CCGTCTGCGTTATCTGGTCTGCCTGACGGTGGCGGATATCTGCGCCACCAACGAAACCCTGTGGAACAGTTGGAAACAGA GCCTGTTGCGCGAGCTGTATTTTGCCACCGAAAAACAGCTGCGCCGCGGCATGCAAAACAGCCCGGACCTGCGCGAACGC GTACGTCATCATCGCCTGCAGGCTTTGGCGTTGCTGCGCATGGACAATATCGACGAGGAGGCGCTGCACCGCATCTGGAG CCGCTGTCGCGCCGATTACTTCCTGCGTCATTCACCCAACCAGTTGGCCTGGCATGCGCGCCATTTGCTGGCCCATGACT CCACCAAACCGCTGGTGCTGGTCAGCCGGCAGGCCACGCGCGGCGGCACCGAAATTTTCATCTGGAGCCCTGACCGCCCT TACCTGTTTGCCGCCGTGGCCGGGGAGATGGATCGCCGTAACCTGAGCGTACATGACGCGCAGATCTTCACTAATCGTGA CGGCATGGCAATGGATACCTTTATCGTACTGGAGCCGGACGGCAGCCCGCTGGCCCAGGACCGCCACACGGCGATCCGCC ACGCACTATTGCAGGCCATTACCCAGCGGGAATATCAGCCGCCGCGCGTGCGCAGGCCGTCTTCCAAGCTGCGTCATTTT AGCGTGCCGACCGAAGTCAGTTTCCTGCCGACCCATACCGACCGTCGCAGCTATCTGGAACTGACCGCACTCGACCAGCC AGGTCTGTTGGCTCGGGTGGGCGAAGTGTTCGCCGATCTCAACCTGTCGCTGCACGGCGCACGCATCTCCACTATCGGCG AACGGGTTGAGGATTTATTTATTCTGGCCGACAGCGATCGACGCGCCCTTAACCCGGAAACGCGCAGAAAGTTGGAACAA CGGTTGACAGAGGCCCTCAATCCAAACGATAAAATGTGA
Upstream 100 bases:
>100_bases CCAACATCATTACGCACGAGATGTAAGCACCGCGGCGTTTTGCCGCGATGCATGATGTCACAGGCCGGCTTTTGCCGGCC TTTTTTATGGGCTGCGTATT
Downstream 100 bases:
>100_bases TACAAGTAACCTTTTCGTAGACAACATCAGGACAGAGAACAGCATGCAGCAATTACAAAACGTTATTGAAAACGCCTTCG AACGCCGTGCGGAAATCACC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MSENFRQQDTSVISPQAVPVQPEYPNAYGDEEINCIALKQRLEQFQLWLAAAFNAGSSAESLVAARSDFIDRLLRRLWVF YGFEDIPETALVAVGGYGRGELHPLSDIDVLVLSQRRLNEQQSQRVGEFITLLWDLKLEVGHSVRTLEECLLEGLADLTV ATNLIESRMICGDVALFLQMQKHIFSDGFWPSPQFFHAKVVEQQERHQRYHGTSYNLEPDIKSSPGGLRDIHTLLWVARR HFGATSLDEMVGFGFLTQAERNELNECQSFLWRIRFALHLVLPRYDNRLLFDRQLNVAQLLRYEGEGNEPVERMMKDFYR MTRRVGELNHMLLQLFDEAILALDATEKPRPLNDDFQLRGDLIDLRDETLFIRQPESIMRMFYLMVRNREIKGIYSTTVR QLRHARRHLKQPLCTIPEARELFMAILRHPGAVSRALVPMHRHSVLWAYMPQWGKIVGQMQFDLFHAYTVDEHTIRVLQK LESFADAETRPRHPLCVELYPRLPNPELLLLAALFHDIAKGRGGDHSILGAQDVLEFAEVHGLNSREAQLVAWLVRCHLL MSVTAQRRDIQDPTVIQQFSAEVQSETRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRER VRHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLAHDSTKPLVLVSRQATRGGTEIFIWSPDRP YLFAAVAGEMDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHTAIRHALLQAITQREYQPPRVRRPSSKLRHF SVPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARISTIGERVEDLFILADSDRRALNPETRRKLEQ RLTEALNPNDKM
Sequences:
>Translated_892_residues MSENFRQQDTSVISPQAVPVQPEYPNAYGDEEINCIALKQRLEQFQLWLAAAFNAGSSAESLVAARSDFIDRLLRRLWVF YGFEDIPETALVAVGGYGRGELHPLSDIDVLVLSQRRLNEQQSQRVGEFITLLWDLKLEVGHSVRTLEECLLEGLADLTV ATNLIESRMICGDVALFLQMQKHIFSDGFWPSPQFFHAKVVEQQERHQRYHGTSYNLEPDIKSSPGGLRDIHTLLWVARR HFGATSLDEMVGFGFLTQAERNELNECQSFLWRIRFALHLVLPRYDNRLLFDRQLNVAQLLRYEGEGNEPVERMMKDFYR MTRRVGELNHMLLQLFDEAILALDATEKPRPLNDDFQLRGDLIDLRDETLFIRQPESIMRMFYLMVRNREIKGIYSTTVR QLRHARRHLKQPLCTIPEARELFMAILRHPGAVSRALVPMHRHSVLWAYMPQWGKIVGQMQFDLFHAYTVDEHTIRVLQK LESFADAETRPRHPLCVELYPRLPNPELLLLAALFHDIAKGRGGDHSILGAQDVLEFAEVHGLNSREAQLVAWLVRCHLL MSVTAQRRDIQDPTVIQQFSAEVQSETRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRER VRHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLAHDSTKPLVLVSRQATRGGTEIFIWSPDRP YLFAAVAGEMDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHTAIRHALLQAITQREYQPPRVRRPSSKLRHF SVPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARISTIGERVEDLFILADSDRRALNPETRRKLEQ RLTEALNPNDKM >Mature_891_residues SENFRQQDTSVISPQAVPVQPEYPNAYGDEEINCIALKQRLEQFQLWLAAAFNAGSSAESLVAARSDFIDRLLRRLWVFY GFEDIPETALVAVGGYGRGELHPLSDIDVLVLSQRRLNEQQSQRVGEFITLLWDLKLEVGHSVRTLEECLLEGLADLTVA TNLIESRMICGDVALFLQMQKHIFSDGFWPSPQFFHAKVVEQQERHQRYHGTSYNLEPDIKSSPGGLRDIHTLLWVARRH FGATSLDEMVGFGFLTQAERNELNECQSFLWRIRFALHLVLPRYDNRLLFDRQLNVAQLLRYEGEGNEPVERMMKDFYRM TRRVGELNHMLLQLFDEAILALDATEKPRPLNDDFQLRGDLIDLRDETLFIRQPESIMRMFYLMVRNREIKGIYSTTVRQ LRHARRHLKQPLCTIPEARELFMAILRHPGAVSRALVPMHRHSVLWAYMPQWGKIVGQMQFDLFHAYTVDEHTIRVLQKL ESFADAETRPRHPLCVELYPRLPNPELLLLAALFHDIAKGRGGDHSILGAQDVLEFAEVHGLNSREAQLVAWLVRCHLLM SVTAQRRDIQDPTVIQQFSAEVQSETRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRERV RHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLAHDSTKPLVLVSRQATRGGTEIFIWSPDRPY LFAAVAGEMDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHTAIRHALLQAITQREYQPPRVRRPSSKLRHFS VPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARISTIGERVEDLFILADSDRRALNPETRRKLEQR LTEALNPNDKM
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family
Homologues:
Organism=Escherichia coli, GI1786363, Length=875, Percent_Identity=77.9428571428572, Blast_Score=1432, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLND_SERP5 (A8GIE8)
Other databases:
- EMBL: CP000826 - RefSeq: YP_001480016.1 - ProteinModelPortal: A8GIE8 - STRING: A8GIE8 - GeneID: 5607191 - GenomeReviews: CP000826_GR - KEGG: spe:Spro_3792 - eggNOG: COG2844 - HOGENOM: HBG687872 - OMA: MQHDLFH - ProtClustDB: PRK05007 - BioCyc: SPRO399741:SPRO_3792-MONOMER - HAMAP: MF_00277 - InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 - PANTHER: PTHR13734:SF1 - PIRSF: PIRSF006288 - SMART: SM00471 - TIGRFAMs: TIGR01693
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2
EC number: =2.7.7.59
Molecular weight: Translated: 103202; Mature: 103070
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENFRQQDTSVISPQAVPVQPEYPNAYGDEEINCIALKQRLEQFQLWLAAAFNAGSSAE CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH SLVAARSDFIDRLLRRLWVFYGFEDIPETALVAVGGYGRGELHPLSDIDVLVLSQRRLNE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCH QQSQRVGEFITLLWDLKLEVGHSVRTLEECLLEGLADLTVATNLIESRMICGDVALFLQM HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKHIFSDGFWPSPQFFHAKVVEQQERHQRYHGTSYNLEPDIKSSPGGLRDIHTLLWVARR HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH HFGATSLDEMVGFGFLTQAERNELNECQSFLWRIRFALHLVLPRYDNRLLFDRQLNVAQL HCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH LRYEGEGNEPVERMMKDFYRMTRRVGELNHMLLQLFDEAILALDATEKPRPLNDDFQLRG HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCC DLIDLRDETLFIRQPESIMRMFYLMVRNREIKGIYSTTVRQLRHARRHLKQPLCTIPEAR CEEECCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH ELFMAILRHPGAVSRALVPMHRHSVLWAYMPQWGKIVGQMQFDLFHAYTVDEHTIRVLQK HHHHHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHEEECCHHHHHHHHH LESFADAETRPRHPLCVELYPRLPNPELLLLAALFHDIAKGRGGDHSILGAQDVLEFAEV HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH HGLNSREAQLVAWLVRCHLLMSVTAQRRDIQDPTVIQQFSAEVQSETRLRYLVCLTVADI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CATNETLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRERVRHHRLQALALLRMDNIDEE HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH ALHRIWSRCRADYFLRHSPNQLAWHARHLLAHDSTKPLVLVSRQATRGGTEIFIWSPDRP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCC YLFAAVAGEMDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHTAIRHALLQAI EEEEEECCCCCCCCCCEEHHEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH TQREYQPPRVRRPSSKLRHFSVPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADL HHCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHC NLSLHGARISTIGERVEDLFILADSDRRALNPETRRKLEQRLTEALNPNDKM CCEECCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SENFRQQDTSVISPQAVPVQPEYPNAYGDEEINCIALKQRLEQFQLWLAAAFNAGSSAE CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH SLVAARSDFIDRLLRRLWVFYGFEDIPETALVAVGGYGRGELHPLSDIDVLVLSQRRLNE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCH QQSQRVGEFITLLWDLKLEVGHSVRTLEECLLEGLADLTVATNLIESRMICGDVALFLQM HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKHIFSDGFWPSPQFFHAKVVEQQERHQRYHGTSYNLEPDIKSSPGGLRDIHTLLWVARR HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH HFGATSLDEMVGFGFLTQAERNELNECQSFLWRIRFALHLVLPRYDNRLLFDRQLNVAQL HCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH LRYEGEGNEPVERMMKDFYRMTRRVGELNHMLLQLFDEAILALDATEKPRPLNDDFQLRG HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCC DLIDLRDETLFIRQPESIMRMFYLMVRNREIKGIYSTTVRQLRHARRHLKQPLCTIPEAR CEEECCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH ELFMAILRHPGAVSRALVPMHRHSVLWAYMPQWGKIVGQMQFDLFHAYTVDEHTIRVLQK HHHHHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHEEECCHHHHHHHHH LESFADAETRPRHPLCVELYPRLPNPELLLLAALFHDIAKGRGGDHSILGAQDVLEFAEV HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH HGLNSREAQLVAWLVRCHLLMSVTAQRRDIQDPTVIQQFSAEVQSETRLRYLVCLTVADI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CATNETLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRERVRHHRLQALALLRMDNIDEE HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH ALHRIWSRCRADYFLRHSPNQLAWHARHLLAHDSTKPLVLVSRQATRGGTEIFIWSPDRP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCC YLFAAVAGEMDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHTAIRHALLQAI EEEEEECCCCCCCCCCEEHHEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH TQREYQPPRVRRPSSKLRHFSVPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADL HHCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHC NLSLHGARISTIGERVEDLFILADSDRRALNPETRRKLEQRLTEALNPNDKM CCEECCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA