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The map label for this gene is yiaU [H]

Identifier: 157371931

GI number: 157371931

Start: 4086932

End: 4087879

Strand: Direct

Name: yiaU [H]

Synonym: Spro_3696

Alternate gene names: 157371931

Gene position: 4086932-4087879 (Clockwise)

Preceding gene: 157371927

Following gene: 157371932

Centisome position: 75.01

GC content: 56.33

Gene sequence:

>948_bases
ATGGCTCACCGCGTGAAAGCAAAAGACTTCAGGATCGACGAACTCAGGATCGTTCGCACCATCGCCGAAACCGCCAGCGT
CAGCAAGGCGGCACAGCTGCTGGATATGCCGCAATCCAATGTGTCGCGCACCCTGACGGCGCTGGAACGGCGACTTGGCC
TGGAGATATTTCTACGCAGCCCACGAACGCTGTCTTTGACCGAGTTTGGTGAACAGTTTTTACGCCGCGCCGCTCAGCTA
TTGGATGAGCATAACGACCTGCTCGATATGTCCGGCACCTATAAACAAAGCCTGAACGGCATGGTGACGCTTGGCGCACC
GATCGGCATCCATTCATTCCTGACCCGTTATCTACTGCCGCCGTTGCTGCGCGAGTCACCCGAACTGATCGTCGACCTGG
TGACCCGCAATCCGGATGAACGTGAGAAAAAATATGGCGCGGTTTTCGACAGTGACAGCGATCTGCTGATCAGTTTCTTC
CAGCCACAGAATGAAAGCCTGATCGCCCGACCACTGACCCGCTTCCGGGTGGGGCTGTTTGCATCGCCGGATTATATCGC
CAACTCTCCGCTCGTGGAGCCGACTGAATTGACGCAGCATCGCTGCATCACCCTGCGGGTATTGGGCGGCAGCCGTAATA
CCTGGAGCTGTTACAACTCGCTGGGGCAGTTGGTCGATGTAGCGGTCAACGGCACCAGCATCTGCGACAATATTCTGCCG
GCTATTGAGTTAGCCAAGCAGGGGCTGGGCATTGTTTATGCCCCTTACTACTCGGTGGCCTCGGCGCTGGAGTCCGGTTC
ACTGCTGCCCTGCATTGAGCGCGAACGCTGCATCGATATGCAGGCGTATCTTATTTACCGCCAACGTGGCGTGTTACCCC
ACCGGGTGCAGGTGATGATGGACAGCATCATGAATACCATTAAGCTGCACGAACATCGATTGGTCTAA

Upstream 100 bases:

>100_bases
GCATAGCAAATAATTGACCAAAAGAATACCCGCCGGTCAGTGATAAGTCATATGACAATAACGGCAAAAATGTATATCAT
TTTTGATATACAAACTCAGA

Downstream 100 bases:

>100_bases
CCGCCAGCATCCATTAACGCATACGGCTACCACTCCCGGCATATTATTTAAATAAACCCAGAGTCCAATTTCGGACTCTG
GGCACAACCTTATGAAATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MAHRVKAKDFRIDELRIVRTIAETASVSKAAQLLDMPQSNVSRTLTALERRLGLEIFLRSPRTLSLTEFGEQFLRRAAQL
LDEHNDLLDMSGTYKQSLNGMVTLGAPIGIHSFLTRYLLPPLLRESPELIVDLVTRNPDEREKKYGAVFDSDSDLLISFF
QPQNESLIARPLTRFRVGLFASPDYIANSPLVEPTELTQHRCITLRVLGGSRNTWSCYNSLGQLVDVAVNGTSICDNILP
AIELAKQGLGIVYAPYYSVASALESGSLLPCIERERCIDMQAYLIYRQRGVLPHRVQVMMDSIMNTIKLHEHRLV

Sequences:

>Translated_315_residues
MAHRVKAKDFRIDELRIVRTIAETASVSKAAQLLDMPQSNVSRTLTALERRLGLEIFLRSPRTLSLTEFGEQFLRRAAQL
LDEHNDLLDMSGTYKQSLNGMVTLGAPIGIHSFLTRYLLPPLLRESPELIVDLVTRNPDEREKKYGAVFDSDSDLLISFF
QPQNESLIARPLTRFRVGLFASPDYIANSPLVEPTELTQHRCITLRVLGGSRNTWSCYNSLGQLVDVAVNGTSICDNILP
AIELAKQGLGIVYAPYYSVASALESGSLLPCIERERCIDMQAYLIYRQRGVLPHRVQVMMDSIMNTIKLHEHRLV
>Mature_314_residues
AHRVKAKDFRIDELRIVRTIAETASVSKAAQLLDMPQSNVSRTLTALERRLGLEIFLRSPRTLSLTEFGEQFLRRAAQLL
DEHNDLLDMSGTYKQSLNGMVTLGAPIGIHSFLTRYLLPPLLRESPELIVDLVTRNPDEREKKYGAVFDSDSDLLISFFQ
PQNESLIARPLTRFRVGLFASPDYIANSPLVEPTELTQHRCITLRVLGGSRNTWSCYNSLGQLVDVAVNGTSICDNILPA
IELAKQGLGIVYAPYYSVASALESGSLLPCIERERCIDMQAYLIYRQRGVLPHRVQVMMDSIMNTIKLHEHRLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=35.3333333333333, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=27.1523178807947, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI145693193, Length=311, Percent_Identity=27.0096463022508, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787128, Length=268, Percent_Identity=25, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=23.3108108108108, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789440, Length=278, Percent_Identity=25.1798561151079, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=25.0836120401338, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35485; Mature: 35353

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHRVKAKDFRIDELRIVRTIAETASVSKAAQLLDMPQSNVSRTLTALERRLGLEIFLRS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECC
PRTLSLTEFGEQFLRRAAQLLDEHNDLLDMSGTYKQSLNGMVTLGAPIGIHSFLTRYLLP
CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEECCCCCHHHHHHHHHCC
PLLRESPELIVDLVTRNPDEREKKYGAVFDSDSDLLISFFQPQNESLIARPLTRFRVGLF
HHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
ASPDYIANSPLVEPTELTQHRCITLRVLGGSRNTWSCYNSLGQLVDVAVNGTSICDNILP
CCCCHHCCCCCCCHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AIELAKQGLGIVYAPYYSVASALESGSLLPCIERERCIDMQAYLIYRQRGVLPHRVQVMM
HHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
DSIMNTIKLHEHRLV
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
AHRVKAKDFRIDELRIVRTIAETASVSKAAQLLDMPQSNVSRTLTALERRLGLEIFLRS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECC
PRTLSLTEFGEQFLRRAAQLLDEHNDLLDMSGTYKQSLNGMVTLGAPIGIHSFLTRYLLP
CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEECCCCCHHHHHHHHHCC
PLLRESPELIVDLVTRNPDEREKKYGAVFDSDSDLLISFFQPQNESLIARPLTRFRVGLF
HHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
ASPDYIANSPLVEPTELTQHRCITLRVLGGSRNTWSCYNSLGQLVDVAVNGTSICDNILP
CCCCHHCCCCCCCHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AIELAKQGLGIVYAPYYSVASALESGSLLPCIERERCIDMQAYLIYRQRGVLPHRVQVMM
HHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
DSIMNTIKLHEHRLV
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]