Click here to switch to the map view.

The map label for this gene is ydcS [H]

Identifier: 157371881

GI number: 157371881

Start: 4033145

End: 4034299

Strand: Reverse

Name: ydcS [H]

Synonym: Spro_3646

Alternate gene names: 157371881

Gene position: 4034299-4033145 (Counterclockwise)

Preceding gene: 157371882

Following gene: 157371880

Centisome position: 74.04

GC content: 58.96

Gene sequence:

>1155_bases
ATGGGAAAAACTACCGCAGTCACCACCACAGTTTCCGCACTCTGTTTCACCGTGCTTTGCGGCCTGGCCCAGGCGGCAGA
CTTGCCGCAGGCGCTGGGTAAAGGCGAAGGGCGACTGGATATCATCGCCTGGCCGGGCTATATCGAACGTGGCCAGTCCG
ATAAAAACTATGACTGGGTCAGCCAGTTTGAAAAGCAAACCAGCTGCGCGGTGAATGTGAAAACCGCCGCCACCTCCGAT
GAAATGGTCAGCCTGATGGCCAAGGGCGGCTATGACCTGGTCACCGCTTCCGGCGACGCCTCGCTGCGATTGATCTTCGG
TAAACGGGTGCAGCCAATCAACACTGCGCTGATCCCCAACTGGAAAAACATCGACCCGCGCCTGCTGAACGGTGCCTGGT
ACACCGTTGACGGCAAAACCTACGGCACGCCTTATCAGTGGGGGCCAAACCTGCTGATGTACAACACCAAAACCTTCCCA
ACGCCGCCAGACAGCTGGGCGGTAGTGTTCCAGCAGCAGAACCTGCCGGACGGCAAGACCAATCAGGGCCGGGTGCAGGC
CTACGACGGGCCAATTTACATCGCCGATGCGGCGCTGTTCCTGAAGGCCACGCAACCGCAGCTTGGCATCAGCGATCCGT
ACCAACTGAACGAAGAGCAGTATCAGGCCGCCTTGAAGCTATTGCGCACCCAGCATGCCTTGATCCACCGCTACTGGCAT
GACACCTCGGTGCAGATGAGCGATTTCAAAAACGAAGGCGTGGTGGCCTCCAGCGCCTGGCCCTATCAGGCCAATGCTCT
GAAAGGAGAAGGCCAGCCGATTGGCACCGTGTTCCCGAAAGAGGGAGTTACCGGCTGGGCGGACACCACCATGCTGCACA
GCGATGCCAAGCATCCGAACTGTGCTTACCTGTGGATGAACTGGTCGCTGGAGCCGAAAGTGCAGGGCGACGTTGCCGCC
TGGTTTGGTTCGGTACCGGCATCACCGGCGGGCTGCAAGGCCAGCACGCTACTGGGCGACAAAGGTTGTGAAACCAACGG
CTTCAACCAGTTCGACAAGATTGCCTTCTGGAAAACACCGCAGGCACAGGGCGGCAAATTCGTGCCATACAGCCGCTGGA
CTCAGGACTATATCGCCATCATGGGCGGTCGCTAA

Upstream 100 bases:

>100_bases
TCAGGCATGTAATGGCGAAGTTTAAAGCCAGCTTCTAATGAAAACTACAGCGGCAGCCGTTCCCTGCCGCACACAGATAC
GCAACACAGGGGTTATTACG

Downstream 100 bases:

>100_bases
CCCGCGGGGGCGTAGCCTGCTACGCCCGATTAATGCCTTTCAGGAGCGCAGATCATGACCATTGCCGTGCAATTTATCGA
TGTTTCGCGGAGCTTCGGCG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MGKTTAVTTTVSALCFTVLCGLAQAADLPQALGKGEGRLDIIAWPGYIERGQSDKNYDWVSQFEKQTSCAVNVKTAATSD
EMVSLMAKGGYDLVTASGDASLRLIFGKRVQPINTALIPNWKNIDPRLLNGAWYTVDGKTYGTPYQWGPNLLMYNTKTFP
TPPDSWAVVFQQQNLPDGKTNQGRVQAYDGPIYIADAALFLKATQPQLGISDPYQLNEEQYQAALKLLRTQHALIHRYWH
DTSVQMSDFKNEGVVASSAWPYQANALKGEGQPIGTVFPKEGVTGWADTTMLHSDAKHPNCAYLWMNWSLEPKVQGDVAA
WFGSVPASPAGCKASTLLGDKGCETNGFNQFDKIAFWKTPQAQGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_384_residues
MGKTTAVTTTVSALCFTVLCGLAQAADLPQALGKGEGRLDIIAWPGYIERGQSDKNYDWVSQFEKQTSCAVNVKTAATSD
EMVSLMAKGGYDLVTASGDASLRLIFGKRVQPINTALIPNWKNIDPRLLNGAWYTVDGKTYGTPYQWGPNLLMYNTKTFP
TPPDSWAVVFQQQNLPDGKTNQGRVQAYDGPIYIADAALFLKATQPQLGISDPYQLNEEQYQAALKLLRTQHALIHRYWH
DTSVQMSDFKNEGVVASSAWPYQANALKGEGQPIGTVFPKEGVTGWADTTMLHSDAKHPNCAYLWMNWSLEPKVQGDVAA
WFGSVPASPAGCKASTLLGDKGCETNGFNQFDKIAFWKTPQAQGGKFVPYSRWTQDYIAIMGGR
>Mature_383_residues
GKTTAVTTTVSALCFTVLCGLAQAADLPQALGKGEGRLDIIAWPGYIERGQSDKNYDWVSQFEKQTSCAVNVKTAATSDE
MVSLMAKGGYDLVTASGDASLRLIFGKRVQPINTALIPNWKNIDPRLLNGAWYTVDGKTYGTPYQWGPNLLMYNTKTFPT
PPDSWAVVFQQQNLPDGKTNQGRVQAYDGPIYIADAALFLKATQPQLGISDPYQLNEEQYQAALKLLRTQHALIHRYWHD
TSVQMSDFKNEGVVASSAWPYQANALKGEGQPIGTVFPKEGVTGWADTTMLHSDAKHPNCAYLWMNWSLEPKVQGDVAAW
FGSVPASPAGCKASTLLGDKGCETNGFNQFDKIAFWKTPQAQGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=384, Percent_Identity=82.5520833333333, Blast_Score=664, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=319, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42186; Mature: 42055

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTTAVTTTVSALCFTVLCGLAQAADLPQALGKGEGRLDIIAWPGYIERGQSDKNYDWV
CCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHHHCCCCCCCCHHH
SQFEKQTSCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIFGKRVQPINTALIPN
HHHHHHCCEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCC
WKNIDPRLLNGAWYTVDGKTYGTPYQWGPNLLMYNTKTFPTPPDSWAVVFQQQNLPDGKT
CCCCCCEEECCEEEEECCCEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCC
NQGRVQAYDGPIYIADAALFLKATQPQLGISDPYQLNEEQYQAALKLLRTQHALIHRYWH
CCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
DTSVQMSDFKNEGVVASSAWPYQANALKGEGQPIGTVFPKEGVTGWADTTMLHSDAKHPN
CCCEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHEEECCCCCCC
CAYLWMNWSLEPKVQGDVAAWFGSVPASPAGCKASTLLGDKGCETNGFNQFDKIAFWKTP
EEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHCEEEEECC
QAQGGKFVPYSRWTQDYIAIMGGR
CCCCCEECCHHHCCCCEEEEECCC
>Mature Secondary Structure 
GKTTAVTTTVSALCFTVLCGLAQAADLPQALGKGEGRLDIIAWPGYIERGQSDKNYDWV
CCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHHHCCCCCCCCHHH
SQFEKQTSCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIFGKRVQPINTALIPN
HHHHHHCCEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCC
WKNIDPRLLNGAWYTVDGKTYGTPYQWGPNLLMYNTKTFPTPPDSWAVVFQQQNLPDGKT
CCCCCCEEECCEEEEECCCEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCC
NQGRVQAYDGPIYIADAALFLKATQPQLGISDPYQLNEEQYQAALKLLRTQHALIHRYWH
CCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
DTSVQMSDFKNEGVVASSAWPYQANALKGEGQPIGTVFPKEGVTGWADTTMLHSDAKHPN
CCCEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHEEECCCCCCC
CAYLWMNWSLEPKVQGDVAAWFGSVPASPAGCKASTLLGDKGCETNGFNQFDKIAFWKTP
EEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHCEEEEECC
QAQGGKFVPYSRWTQDYIAIMGGR
CCCCCEECCHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]