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The map label for this gene is rodZ

Identifier: 157371845

GI number: 157371845

Start: 3989511

End: 3990482

Strand: Reverse

Name: rodZ

Synonym: Spro_3610

Alternate gene names: 157371845

Gene position: 3990482-3989511 (Counterclockwise)

Preceding gene: 157371846

Following gene: 157371844

Centisome position: 73.24

GC content: 56.89

Gene sequence:

>972_bases
ATGAATACTGAAGCCTCCCAAGATAAAACTGTATCAATGACGACAGGCGAACGTCTGCGTCAGGCCCGTGAACAACTCGG
GTTGAGTCAACAGGCCGTTGCAGAACGCCTGTGCCTCAAAATGTCTACCGTGCGCGATATCGAAGAAGACAATCTGTCCG
CAGATTTGGCTTCAACCTTCGTGCGGGGTTATATCCGTTCCTACGCCAAGCTGGTGCGTTTGCCAGAGGATGAACTGCTG
CCGATGCTGGCCAAGCAGGCTCCGTTGAAGGTTGCGAAGGTTGCACCAATGCAGAGTTTTTCATTGGGCAAGCGCCGCAA
AAAACGCGATGGCTGGCTGATGAGCTTCACCTGGCTGATCGTTTTCGTGGTGGTTGGCCTGACCGGCGCCTGGTGGTGGC
AAAACCACAAGGCCCAGCAGGAAGAGATCGTCACCATGGCCGATCAATCCTCTGCGCAGCTTTCACAAAACAATGAAGGC
CAGTCAGTGCCGTTGACCGACAGCAATGCCGACAACAGCGCGCCTCTGGCTGACAATGGTTCCACGCCGGTAGATACCGG
CGTTGCTCCACAGCAGTCTCAGACTCCGGCCGTTAGCGGCAGTGCAACTGCGCAGCAGCCTGCGGTGGTTTCACCAAGCC
AGACGACTCTGCCTGAGACCACGCCTGCGGCTCCAACTGCGCCGTTACCAACTGCCGACGCGGGCGTGACTGCCCCGGCT
GTTGATCCTAACGCGCTGGTTATGGAGTTCTCCGCCGATTGTTGGTTGCAGGTGAGTGATGCCAACGGTAAAACGTTGTA
CAGCGGCAGCCAGAAAAGCGGCGGCAAGCTGAGCCTGGCGGGTACCGCGCCGTACAAACTGACCATTGGCGCCCCGGCTG
CAGTACAGATTCAATATCAAGGTAAGCCGGTTGATTTAAGCCGGTTTGTTAAGTCAAACCGTGTTGCTCGTCTGACCGTT
GCCGCGCAGTAA

Upstream 100 bases:

>100_bases
TTCGCCGCGTTAGCCGGGCGCCAGGATAGCGTGCAACGCTATGGCAAGCAGTTATCGCGAAGTTTTCCACAATCCAAACA
GTACCAGCAGTTCTTAGCTA

Downstream 100 bases:

>100_bases
TTGCGCGGCCATTGTCGTTAAGTCAGGGCAACAATGGAGAGTAAGTAATGCATAACCAATCGCCCATCATCCGTCGAAAA
TCAACGCGAATTTACGTCGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNTEASQDKTVSMTTGERLRQAREQLGLSQQAVAERLCLKMSTVRDIEEDNLSADLASTFVRGYIRSYAKLVRLPEDELL
PMLAKQAPLKVAKVAPMQSFSLGKRRKKRDGWLMSFTWLIVFVVVGLTGAWWWQNHKAQQEEIVTMADQSSAQLSQNNEG
QSVPLTDSNADNSAPLADNGSTPVDTGVAPQQSQTPAVSGSATAQQPAVVSPSQTTLPETTPAAPTAPLPTADAGVTAPA
VDPNALVMEFSADCWLQVSDANGKTLYSGSQKSGGKLSLAGTAPYKLTIGAPAAVQIQYQGKPVDLSRFVKSNRVARLTV
AAQ

Sequences:

>Translated_323_residues
MNTEASQDKTVSMTTGERLRQAREQLGLSQQAVAERLCLKMSTVRDIEEDNLSADLASTFVRGYIRSYAKLVRLPEDELL
PMLAKQAPLKVAKVAPMQSFSLGKRRKKRDGWLMSFTWLIVFVVVGLTGAWWWQNHKAQQEEIVTMADQSSAQLSQNNEG
QSVPLTDSNADNSAPLADNGSTPVDTGVAPQQSQTPAVSGSATAQQPAVVSPSQTTLPETTPAAPTAPLPTADAGVTAPA
VDPNALVMEFSADCWLQVSDANGKTLYSGSQKSGGKLSLAGTAPYKLTIGAPAAVQIQYQGKPVDLSRFVKSNRVARLTV
AAQ
>Mature_323_residues
MNTEASQDKTVSMTTGERLRQAREQLGLSQQAVAERLCLKMSTVRDIEEDNLSADLASTFVRGYIRSYAKLVRLPEDELL
PMLAKQAPLKVAKVAPMQSFSLGKRRKKRDGWLMSFTWLIVFVVVGLTGAWWWQNHKAQQEEIVTMADQSSAQLSQNNEG
QSVPLTDSNADNSAPLADNGSTPVDTGVAPQQSQTPAVSGSATAQQPAVVSPSQTTLPETTPAAPTAPLPTADAGVTAPA
VDPNALVMEFSADCWLQVSDANGKTLYSGSQKSGGKLSLAGTAPYKLTIGAPAAVQIQYQGKPVDLSRFVKSNRVARLTV
AAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788864, Length=335, Percent_Identity=67.1641791044776, Blast_Score=428, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODZ_SERP5 (A8GHW6)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001479834.1
- STRING:   A8GHW6
- GeneID:   5605863
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_3610
- eggNOG:   COG1426
- HOGENOM:   HBG678691
- OMA:   KLPGHTF
- ProtClustDB:   PRK10856
- BioCyc:   SPRO399741:SPRO_3610-MONOMER
- HAMAP:   MF_02017
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 34499; Mature: 34499

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11187c84)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEASQDKTVSMTTGERLRQAREQLGLSQQAVAERLCLKMSTVRDIEEDNLSADLASTF
CCCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VRGYIRSYAKLVRLPEDELLPMLAKQAPLKVAKVAPMQSFSLGKRRKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
VFVVVGLTGAWWWQNHKAQQEEIVTMADQSSAQLSQNNEGQSVPLTDSNADNSAPLADNG
HHHHHHCCCCCHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
STPVDTGVAPQQSQTPAVSGSATAQQPAVVSPSQTTLPETTPAAPTAPLPTADAGVTAPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VDPNALVMEFSADCWLQVSDANGKTLYSGSQKSGGKLSLAGTAPYKLTIGAPAAVQIQYQ
CCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCEEEEECCCCEEEEECCCEEEEEEEC
GKPVDLSRFVKSNRVARLTVAAQ
CCCCCHHHHHHCCCEEEEEEECH
>Mature Secondary Structure
MNTEASQDKTVSMTTGERLRQAREQLGLSQQAVAERLCLKMSTVRDIEEDNLSADLASTF
CCCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VRGYIRSYAKLVRLPEDELLPMLAKQAPLKVAKVAPMQSFSLGKRRKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
VFVVVGLTGAWWWQNHKAQQEEIVTMADQSSAQLSQNNEGQSVPLTDSNADNSAPLADNG
HHHHHHCCCCCHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
STPVDTGVAPQQSQTPAVSGSATAQQPAVVSPSQTTLPETTPAAPTAPLPTADAGVTAPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VDPNALVMEFSADCWLQVSDANGKTLYSGSQKSGGKLSLAGTAPYKLTIGAPAAVQIQYQ
CCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCEEEEECCCCEEEEECCCEEEEEEEC
GKPVDLSRFVKSNRVARLTVAAQ
CCCCCHHHHHHCCCEEEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA